BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3017 (PAB3017) DE:Hypothetical protein
         (85 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75190 hypothetical protein PAB3017 - Pyrococcus abyssi (st...   179  5e-45
gi|11499409 A. fulgidus predicted coding region AF1821 [Archaeog...    85  2e-16

>pir||A75190 hypothetical protein PAB3017 - Pyrococcus abyssi (strain Orsay)
          >gi|5457477|emb|CAB48968.1| (AJ248283) hypothetical
          protein [Pyrococcus abyssi]
          Length = 85
          
 Score =  179 bits (450), Expect = 5e-45
 Identities = 84/85 (98%), Positives = 85/85 (99%)

Query: 1  VSDIETRKCPICGGTMVKSKAKNAGYARFFWKPPWKSKATGILRPVVEATPYLCLNCGVV 60
          +SDIETRKCPICGGTMVKSKAKNAGYARFFWKPPWKSKATGILRPVVEATPYLCLNCGVV
Sbjct: 1  MSDIETRKCPICGGTMVKSKAKNAGYARFFWKPPWKSKATGILRPVVEATPYLCLNCGVV 60

Query: 61 LAFVDDETLSTLREEFEEKKLEVGL 85
          LAFVDDETLSTLREEFEEKKLEVGL
Sbjct: 61 LAFVDDETLSTLREEFEEKKLEVGL 85


>gi|11499409 A. fulgidus predicted coding region AF1821 [Archaeoglobus
          fulgidus] >gi|7483714|pir||D69477 hypothetical protein
          AF1821 - Archaeoglobus fulgidus
          >gi|2648731|gb|AAB89435.1| (AE000977) A. fulgidus
          predicted coding region AF1821 [Archaeoglobus fulgidus]
          Length = 81
          
 Score = 85.0 bits (207), Expect = 2e-16
 Identities = 34/71 (47%), Positives = 51/71 (70%), Gaps = 1/71 (1%)

Query: 7  RKCPICGGTMVKSKAKNAGYARFFWKPPWKSKATGILRPVVEATPYLCLNCGVVLAFVDD 66
          RKCP+CGG MV+S+   AGY+R+FW+ PW+ K    L   ++A P+LC+ CG V+ +V++
Sbjct: 3  RKCPLCGGEMVRSRTNQAGYSRYFWRAPWE-KGLAKLGRGIDAYPWLCIKCGAVIPYVEE 61

Query: 67 ETLSTLREEFE 77
           TL  LR+E+E
Sbjct: 62 STLEKLRKEYE 72


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.137    0.430 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32086877
Number of Sequences: 2977
Number of extensions: 1073805
Number of successful extensions: 3332
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3330
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 189,106,746
effective HSP length: 47
effective length of query: 38
effective length of database: 160,977,857
effective search space: 6117158566
effective search space used: 6117158566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)