BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3032 (PAB3032) DE:Hypothetical protein
         (74 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75199 hypothetical protein PAB3032 - Pyrococcus abyssi (st...   147  1e-35
pir||F71080 hypothetical protein PHS027 - Pyrococcus horikoshii ...    74  2e-13
pir||C75121 hypothetical protein PAB3187 - Pyrococcus abyssi (st...    69  7e-12

>pir||B75199 hypothetical protein PAB3032 - Pyrococcus abyssi (strain Orsay)
          >gi|5457550|emb|CAB49041.1| (AJ248283) hypothetical
          protein [Pyrococcus abyssi]
          Length = 74
          
 Score =  147 bits (367), Expect = 1e-35
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1  MGITKVTRNYQITIPSDVRKKLGIKVGDVLIIEIEDGKAVIKKSDLELPLLPGGRGLKVE 60
          MGITKVTRNYQITIPSDVRKKLGIKVGDVLIIEIEDGKAVIKKSDLELPLLPGGRGLKVE
Sbjct: 1  MGITKVTRNYQITIPSDVRKKLGIKVGDVLIIEIEDGKAVIKKSDLELPLLPGGRGLKVE 60

Query: 61 DIEDAIRRGQREEG 74
          DIEDAIRRGQREEG
Sbjct: 61 DIEDAIRRGQREEG 74


>pir||F71080 hypothetical protein PHS027 - Pyrococcus horikoshii
          >gi|3257321|dbj|BAA30004.1| (AP000004) 74aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 74
          
 Score = 74.1 bits (179), Expect = 2e-13
 Identities = 37/72 (51%), Positives = 52/72 (71%)

Query: 1  MGITKVTRNYQITIPSDVRKKLGIKVGDVLIIEIEDGKAVIKKSDLELPLLPGGRGLKVE 60
          M ITKVTRNY+ITIP+++RK LGIK G++L +++EDGK +I++   E   L  G+ L  E
Sbjct: 1  MPITKVTRNYRITIPAEIRKALGIKEGELLEVKLEDGKIIIERLKKERKTLKLGKKLTPE 60

Query: 61 DIEDAIRRGQRE 72
          +IE AI  G +E
Sbjct: 61 EIEKAIVEGMKE 72


>pir||C75121 hypothetical protein PAB3187 - Pyrococcus abyssi (strain Orsay)
          >gi|5458195|emb|CAB49684.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 75
          
 Score = 68.7 bits (165), Expect = 7e-12
 Identities = 36/72 (50%), Positives = 46/72 (63%)

Query: 1  MGITKVTRNYQITIPSDVRKKLGIKVGDVLIIEIEDGKAVIKKSDLELPLLPGGRGLKVE 60
          M ITKVTRNYQ+T+P++VRK LGI+ GD L +E+   + V++K       L  GR L  E
Sbjct: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE 60

Query: 61 DIEDAIRRGQRE 72
          DIE  I  G RE
Sbjct: 61 DIERIIEEGMRE 72


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.143    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27052295
Number of Sequences: 2977
Number of extensions: 981596
Number of successful extensions: 2116
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2113
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 189,106,746
effective HSP length: 53
effective length of query: 21
effective length of database: 157,386,935
effective search space: 3305125635
effective search space used: 3305125635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 156 (65.2 bits)