BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3072 (PAB3072) DE:Hypothetical protein
         (49 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75218 hypothetical protein PAB3072 - Pyrococcus abyssi (st...   106  3e-23
pir||A71204 probable DNA-directed RNA polymerase - Pyrococcus ho...   101  1e-21

>pir||F75218 hypothetical protein PAB3072 - Pyrococcus abyssi (strain Orsay)
          >gi|5457706|emb|CAB49197.1| (AJ248283) hypothetical
          protein [Pyrococcus abyssi]
          Length = 49
          
 Score =  106 bits (262), Expect = 3e-23
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  MVEAIYRCAKCGREVKIDLSVTRDLRCPYCGSKILYKPRPKVPRRVKAI 49
          MVEAIYRCAKCGREVKIDLSVTRDLRCPYCGSKILYKPRPKVPRRVKAI
Sbjct: 1  MVEAIYRCAKCGREVKIDLSVTRDLRCPYCGSKILYKPRPKVPRRVKAI 49


>pir||A71204 probable DNA-directed RNA polymerase - Pyrococcus horikoshii
          >gi|3258341|dbj|BAA31024.1| (AP000007) 77aa long
          hypothetical DNA-directed RNA polymerase [Pyrococcus
          horikoshii]
          Length = 77
          
 Score =  101 bits (248), Expect = 1e-21
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 1  MVEAIYRCAKCGREVKIDLSVTRDLRCPYCGSKILYKPRPKVPRRVKAI 49
          M EA+YRCAKCGREVK+DLS TRDLRCPYCGSKILYKPRPK+PRRVKAI
Sbjct: 29 MPEAVYRCAKCGREVKLDLSTTRDLRCPYCGSKILYKPRPKIPRRVKAI 77


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.144    0.460 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17778602
Number of Sequences: 2977
Number of extensions: 476931
Number of successful extensions: 2540
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2538
Number of HSP's gapped (non-prelim): 2
length of query: 49
length of database: 189,106,746
effective HSP length: 28
effective length of query: 21
effective length of database: 172,349,110
effective search space: 3619331310
effective search space used: 3619331310
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 156 (65.2 bits)