BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3084 (PAB3084) DE:Hypothetical protein
         (94 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75143 hypothetical protein PAB3084 - Pyrococcus abyssi (st...   195  1e-49
sp|O26972|Y886_METTH HYPOTHETICAL PROTEIN MTH886 >gi|7482271|pir...    70  5e-12

>pir||G75143 hypothetical protein PAB3084 - Pyrococcus abyssi (strain Orsay)
          >gi|5457740|emb|CAB49230.1| (AJ248284) hypothetical
          protein [Pyrococcus abyssi]
          Length = 94
          
 Score =  195 bits (490), Expect = 1e-49
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MKRLGKVSHYAKQGLLIVRSTWVPSLNDPVIDKDLKFVGIVKDVFGPVKRPYVAIKPKVD 60
          MKRLGKVSHYAKQGLLIVRSTWVPSLNDPVIDKDLKFVGIVKDVFGPVKRPYVAIKPKVD
Sbjct: 1  MKRLGKVSHYAKQGLLIVRSTWVPSLNDPVIDKDLKFVGIVKDVFGPVKRPYVAIKPKVD 60

Query: 61 DPEKYVGQVLYIDERRKKRKERKGRGRMKKKFKG 94
          DPEKYVGQVLYIDERRKKRKERKGRGRMKKKFKG
Sbjct: 61 DPEKYVGQVLYIDERRKKRKERKGRGRMKKKFKG 94


>sp|O26972|Y886_METTH HYPOTHETICAL PROTEIN MTH886 >gi|7482271|pir||D69218 conserved
          hypothetical protein MTH886 - Methanobacterium
          thermoautotrophicum (strain Delta H)
          >gi|2621980|gb|AAB85384.1| (AE000864) conserved protein
          [Methanobacterium thermoautotrophicum]
          Length = 92
          
 Score = 70.2 bits (169), Expect = 5e-12
 Identities = 37/91 (40%), Positives = 54/91 (58%), Gaps = 4/91 (4%)

Query: 1  MKRLGKVSHYAKQGLLIVRSTWVPSLNDPVIDKDLKFVGIVKDVFGPVKRPYVAIKP-KV 59
          MK LG +SH + +G +I RS     L  PV   D K +G V D+FGP + PY++IKP + 
Sbjct: 1  MKALGNISHVSNKGRIIARSDRTQQLGAPVFTSDGKRIGKVHDIFGPTRNPYISIKPSRA 60

Query: 60 DDPEKY---VGQVLYIDERRKKRKERKGRGR 87
           +PEK+   VG+ LY+  +  K+  R+ R R
Sbjct: 61 INPEKFENRVGETLYVGIKNVKKWGRRKRRR 91


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.143    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37131209
Number of Sequences: 2977
Number of extensions: 1495943
Number of successful extensions: 4468
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4467
Number of HSP's gapped (non-prelim): 2
length of query: 94
length of database: 189,106,746
effective HSP length: 49
effective length of query: 45
effective length of database: 159,780,883
effective search space: 7190139735
effective search space used: 7190139735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)