BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3086 (PAB3086) DE:Hypothetical protein
         (88 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75144 hypothetical protein PAB3086 - Pyrococcus abyssi (st...   181  2e-45
pir||E71008 hypothetical protein PH1363 - Pyrococcus horikoshii ...    68  3e-11
pir||G83370 hydrogen cyanide synthase HcnB PA2194 [imported] - P...    68  3e-11
pir||H75122 sarcosine oxidase alpha chain truncated homolog PAB1...    66  9e-11

>pir||E75144 hypothetical protein PAB3086 - Pyrococcus abyssi (strain Orsay)
          >gi|5457746|emb|CAB49236.1| (AJ248284) hypothetical
          protein [Pyrococcus abyssi]
          Length = 88
          
 Score =  181 bits (454), Expect = 2e-45
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MRIVCRCNDVTVEDIERLIDEGVTDLEELRRLLRIGMGPCQGRTCIPILISILARKTGKR 60
          MRIVCRCNDVTVEDIERLIDEGVTDLEELRRLLRIGMGPCQGRTCIPILISILARKTGKR
Sbjct: 1  MRIVCRCNDVTVEDIERLIDEGVTDLEELRRLLRIGMGPCQGRTCIPILISILARKTGKR 60

Query: 61 MEDIPLPNARFPIRPVKVEALLGGEGEE 88
          MEDIPLPNARFPIRPVKVEALLGGEGEE
Sbjct: 61 MEDIPLPNARFPIRPVKVEALLGGEGEE 88


>pir||E71008 hypothetical protein PH1363 - Pyrococcus horikoshii
           >gi|3257786|dbj|BAA30469.1| (AP000006) 493aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 493
           
 Score = 67.5 bits (162), Expect = 3e-11
 Identities = 31/78 (39%), Positives = 55/78 (69%), Gaps = 1/78 (1%)

Query: 4   VCRCNDVTVEDIERLIDEGVTDLEELRRLLRIGMGPCQGRTCIPILISILARKTGKRMED 63
           +C C DV+++ ++ +I +G+TDL+ ++RL  + MG CQGR C+     +++++TGK++ +
Sbjct: 414 ICGC-DVSLKKVDEVIRKGITDLQIIKRLTHLAMGFCQGRYCLFNGAVVVSQRTGKKLSE 472

Query: 64  IPLPNARFPIRPVKVEAL 81
           I LP AR PI+ VK+  L
Sbjct: 473 IDLPVARSPIKNVKMGIL 490


>pir||G83370 hydrogen cyanide synthase HcnB PA2194 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9948216|gb|AAG05582.1|AE004646_3 (AE004646) hydrogen
           cyanide synthase HcnB [Pseudomonas aeruginosa]
           Length = 464
           
 Score = 67.5 bits (162), Expect = 3e-11
 Identities = 34/78 (43%), Positives = 44/78 (55%), Gaps = 2/78 (2%)

Query: 3   IVCRCNDVTVEDIERLIDEGVTDLEELRRLLRIGMGPCQGRTCIPILISILARKTGKRME 62
           ++CRC  VT  DIER +++GV D+  L+   R GMG CQGR CI      L R TG+   
Sbjct: 381 VICRCEQVTRGDIERALEQGVQDIAGLKMRTRAGMGDCQGRMCIGYCSDRLRRATGR--H 438

Query: 63  DIPLPNARFPIRPVKVEA 80
           D+     RFPI P+   A
Sbjct: 439 DVGWLRPRFPIDPIPFSA 456


>pir||H75122 sarcosine oxidase alpha chain truncated homolog PAB1842
           [similarity] - Pyrococcus abyssi (strain Orsay)
           >gi|5458208|emb|CAB49697.1| (AJ248285) sarcosine
           oxidase, subunit alpha related (soxA), Nter fragment
           [Pyrococcus abyssi]
           Length = 496
           
 Score = 66.0 bits (158), Expect = 9e-11
 Identities = 31/78 (39%), Positives = 54/78 (68%), Gaps = 1/78 (1%)

Query: 4   VCRCNDVTVEDIERLIDEGVTDLEELRRLLRIGMGPCQGRTCIPILISILARKTGKRMED 63
           +C C DV+++ ++ +I  G+TDL+ ++RL  + MG CQGR C+     I++++TG+R+ +
Sbjct: 417 ICGC-DVSLKKVDDVIRRGITDLQIIKRLTHLAMGFCQGRYCLFNGALIVSQRTGRRLSE 475

Query: 64  IPLPNARFPIRPVKVEAL 81
           I LP AR PI+ V++  L
Sbjct: 476 IDLPVARSPIKNVRMGVL 493


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.147    0.437 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32763917
Number of Sequences: 2977
Number of extensions: 1167844
Number of successful extensions: 2713
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2712
Number of HSP's gapped (non-prelim): 4
length of query: 88
length of database: 189,106,746
effective HSP length: 47
effective length of query: 41
effective length of database: 160,977,857
effective search space: 6600092137
effective search space used: 6600092137
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 158 (66.0 bits)