BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB3089 (HAN1) DE:HISTONE-LIKE PROTEIN HAN1 SUBUNIT
(67 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75148 histone-like protein han1 chain PAB3089 - Pyrococcus... 129 4e-30
sp|O74098|HPHA_PYRHO PROBABLE ARCHAEAL HISTONE A 129 5e-30
pir||F71188 probable archaeal histon - Pyrococcus horikoshii >gi... 129 5e-30
sp|P50485|HPY1_PYRSG ARCHAEAL HISTONE A1 >gi|484071|gb|AAA73426.... 125 7e-29
sp|Q9Y8I1|HPKA_PYRKO ARCHAEAL HISTONE A >gi|4808450|dbj|BAA77575... 118 5e-27
dbj|BAA25805.1| (AB013081) archaeal histone [Pyrococcus furiosus] 117 1e-26
sp|O59627|HPFB_PYRFU ARCHAEAL HISTONE B 117 1e-26
sp|P95669|HANA_THEZI ARCHAEAL HISTONE HAN1 SUBUNIT A >gi|7515013... 115 6e-26
pir||C75164 archaeal histone a2. / archaeal histone a1 (hpya1-2)... 110 2e-24
sp|P50486|HPY2_PYRSG ARCHAEAL HISTONE A2 >gi|484073|gb|AAA73427.... 109 3e-24
pir||H71177 probable archaeal histon - Pyrococcus horikoshii >gi... 109 3e-24
sp|O74092|HPHB_PYRHO PROBABLE ARCHAEAL HISTONE B 109 3e-24
sp|Q9Y8I2|HPKB_PYRKO ARCHAEAL HISTONE B >gi|4808452|dbj|BAA77576... 109 5e-24
sp|Q58342|HJA2_METJA PROBABLE ARCHAEAL HISTONE 2 >gi|2127764|pir... 93 3e-19
gi|11499088 archaeal histone A1 (hpyA1-2) [Archaeoglobus fulgidu... 93 3e-19
sp|Q57632|HJA1_METJA PROBABLE ARCHAEAL HISTONE 1 >gi|2127762|pir... 93 3e-19
gi|11497949 archaeal histone A1 (hpyA1-1) [Archaeoglobus fulgidu... 91 1e-18
gi|10954491 archaeal histone [Methanococcus jannaschii] >gi|2495... 89 4e-18
sp|P48783|HFO2_METFO ARCHAEAL HISTONE A2 >gi|530865|gb|AAA67722.... 89 6e-18
sp|Q58655|HJA3_METJA PROBABLE ARCHAEAL HISTONE 3 >gi|2127763|pir... 86 4e-17
sp|P48781|HMFA_METFE DNA BINDING PROTEIN HMF-1 (ARCHAEAL HISTONE... 84 2e-16
sp|O27731|HMT2_METTH DNA BINDING PROTEIN HMT-1.2 (ARCHAEAL HISTO... 83 4e-16
sp|P50483|HMT1_METTH DNA BINDING PROTEIN HMT-1.1 (ARCHAEAL HISTO... 82 6e-16
pir||A47036 histone-related protein HMf1 - Methanothermus fervidus 82 6e-16
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From M... 82 7e-16
sp|P19267|HMFB_METFE DNA BINDING PROTEIN HMF-2 (ARCHAEAL HISTONE... 80 3e-15
pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Va... 80 3e-15
sp|P48784|HFOB_METFO ARCHAEAL HISTONE B >gi|530861|gb|AAA67720.1... 78 1e-14
sp|P48782|HFO1_METFO ARCHAEAL HISTONE A1 >gi|530863|gb|AAA67721.... 78 1e-14
sp|P50484|HMTB_METTH DNA BINDING PROTEIN HMT-2 (ARCHAEAL HISTONE... 76 4e-14
gb|AAB84760.1| (AE000812) histone HMtB [Methanobacterium thermoa... 76 4e-14
>pir||F75148 histone-like protein han1 chain PAB3089 - Pyrococcus abyssi
(strain Orsay) >gi|5457779|emb|CAB49269.1| (AJ248284)
HISTONE-LIKE PROTEIN HAN1 SUBUNIT [Pyrococcus abyssi]
Length = 67
Score = 129 bits (321), Expect = 4e-30
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 61 IKLAIKS 67
>sp|O74098|HPHA_PYRHO PROBABLE ARCHAEAL HISTONE A
Length = 67
Score = 129 bits (320), Expect = 5e-30
Identities = 66/67 (98%), Positives = 67/67 (99%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIE+AKKAVEFARHAGRKTVKVED
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVED 60
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 61 IKLAIKS 67
>pir||F71188 probable archaeal histon - Pyrococcus horikoshii
>gi|3258218|dbj|BAA30901.1| (AP000007) 70aa long
hypothetical archaeal histon [Pyrococcus horikoshii]
Length = 70
Score = 129 bits (320), Expect = 5e-30
Identities = 66/67 (98%), Positives = 67/67 (99%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIE+AKKAVEFARHAGRKTVKVED
Sbjct: 4 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVED 63
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 64 IKLAIKS 70
>sp|P50485|HPY1_PYRSG ARCHAEAL HISTONE A1 >gi|484071|gb|AAA73426.1| (U08837) archaeal
histone [Pyrococcus sp.]
Length = 67
Score = 125 bits (310), Expect = 7e-29
Identities = 63/67 (94%), Positives = 66/67 (98%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAPVDRLIRKAGAERVSE+AAK+LAEYLEEYAIEV+KKAVEFARHAGRKTVK ED
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEEAAKILAEYLEEYAIEVSKKAVEFARHAGRKTVKAED 60
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 61 IKLAIKS 67
>sp|Q9Y8I1|HPKA_PYRKO ARCHAEAL HISTONE A >gi|4808450|dbj|BAA77575.1| (AB016003)
archaeal histone HPkA [Pyrococcus kodakaraensis]
Length = 67
Score = 118 bits (294), Expect = 5e-27
Identities = 60/67 (89%), Positives = 64/67 (94%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPVDRLIRKAGAERVSE AAKVLAEYLEEYAIE++KKAV+FARHAGRKTVK ED
Sbjct: 1 MAELPIAPVDRLIRKAGAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAED 60
Query: 61 IKLAIKS 67
IKLAIK+
Sbjct: 61 IKLAIKA 67
>dbj|BAA25805.1| (AB013081) archaeal histone [Pyrococcus furiosus]
Length = 68
Score = 117 bits (291), Expect = 1e-26
Identities = 60/67 (89%), Positives = 65/67 (96%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAPVDRLIRKAGA+RVSEQAAKVLAE+LEE AIE+AKKAV+ A+HAGRKTVKVED
Sbjct: 2 MGELPIAPVDRLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVED 61
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 62 IKLAIKS 68
>sp|O59627|HPFB_PYRFU ARCHAEAL HISTONE B
Length = 67
Score = 117 bits (291), Expect = 1e-26
Identities = 60/67 (89%), Positives = 65/67 (96%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAPVDRLIRKAGA+RVSEQAAKVLAE+LEE AIE+AKKAV+ A+HAGRKTVKVED
Sbjct: 1 MGELPIAPVDRLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVED 60
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 61 IKLAIKS 67
>sp|P95669|HANA_THEZI ARCHAEAL HISTONE HAN1 SUBUNIT A >gi|7515013|pir||S71485
histone-like protein HAN1 chain A1 - Thermococcus sp.
(strain AN1) >gi|2072943|gb|AAB53861.1| (U93078)
histone-like protein HAN1 A subunit [Thermococcus
zilligii]
Length = 67
Score = 115 bits (285), Expect = 6e-26
Identities = 56/67 (83%), Positives = 61/67 (90%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAP+DRLIRKAGAERVSE AAK LAEYLEEYAIEV KKA EFARHAGRKTVK ED
Sbjct: 1 MAELPIAPIDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAED 60
Query: 61 IKLAIKS 67
++LA+K+
Sbjct: 61 VRLAVKA 67
>pir||C75164 archaeal histone a2. / archaeal histone a1 (hpya1-2) PAB3117 -
Pyrococcus abyssi (strain Orsay)
>gi|5457904|emb|CAB49394.1| (AJ248284) ARCHAEAL HISTONE
A2. / archaeal histone A1 (hpyA1-2) [Pyrococcus abyssi]
Length = 67
Score = 110 bits (273), Expect = 2e-24
Identities = 55/67 (82%), Positives = 64/67 (95%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+E+AKKAV+ A+HAGRKTVKVED
Sbjct: 1 MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
Query: 61 IKLAIKS 67
IKLAI+S
Sbjct: 61 IKLAIRS 67
>sp|P50486|HPY2_PYRSG ARCHAEAL HISTONE A2 >gi|484073|gb|AAA73427.1| (U08838) archaeal
histone [Pyrococcus sp.]
Length = 67
Score = 109 bits (270), Expect = 3e-24
Identities = 54/67 (80%), Positives = 63/67 (93%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPVDRLIRKAGA+RVSEQAAK+LAE+LEE A+E+A+KAV+ A+HAGRKTVK ED
Sbjct: 1 MAELPIAPVDRLIRKAGAQRVSEQAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKAED 60
Query: 61 IKLAIKS 67
IKLAI+S
Sbjct: 61 IKLAIRS 67
>pir||H71177 probable archaeal histon - Pyrococcus horikoshii
>gi|3258132|dbj|BAA30815.1| (AP000007) 70aa long
hypothetical archaeal histon [Pyrococcus horikoshii]
Length = 70
Score = 109 bits (270), Expect = 3e-24
Identities = 54/67 (80%), Positives = 64/67 (94%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+E+A+KAV+ A+HAGRKTVKVED
Sbjct: 4 MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVED 63
Query: 61 IKLAIKS 67
IKLAI+S
Sbjct: 64 IKLAIRS 70
>sp|O74092|HPHB_PYRHO PROBABLE ARCHAEAL HISTONE B
Length = 67
Score = 109 bits (270), Expect = 3e-24
Identities = 54/67 (80%), Positives = 64/67 (94%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+E+A+KAV+ A+HAGRKTVKVED
Sbjct: 1 MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVED 60
Query: 61 IKLAIKS 67
IKLAI+S
Sbjct: 61 IKLAIRS 67
>sp|Q9Y8I2|HPKB_PYRKO ARCHAEAL HISTONE B >gi|4808452|dbj|BAA77576.1| (AB016004)
archaeal histone HPkB [Pyrococcus kodakaraensis]
Length = 67
Score = 109 bits (269), Expect = 5e-24
Identities = 56/67 (83%), Positives = 61/67 (90%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPVDRLIRKAGA RVSE+AAKVLAE+LEE A+E+AKKAV A+HAGRKTVK ED
Sbjct: 1 MAELPIAPVDRLIRKAGAARVSEEAAKVLAEHLEEKALEIAKKAVALAQHAGRKTVKAED 60
Query: 61 IKLAIKS 67
IKLAIKS
Sbjct: 61 IKLAIKS 67
>sp|Q58342|HJA2_METJA PROBABLE ARCHAEAL HISTONE 2 >gi|2127764|pir||D64416 archaeal
histone - Methanococcus jannaschii
>gi|1591603|gb|AAB98934.1| (U67536) archaeal histone A2
[Methanococcus jannaschii]
Length = 67
Score = 93.2 bits (228), Expect = 3e-19
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELP+AP +R+++KAGAERVS AA+ LAE +EE A+E+AK+AVE A+HA RKTVKVED
Sbjct: 1 MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 61 IKLAIK 66
IKLA+K
Sbjct: 61 IKLALK 66
>gi|11499088 archaeal histone A1 (hpyA1-2) [Archaeoglobus fulgidus]
>gi|6685481|sp|O28779|HAF2_ARCFU PROBABLE ARCHAEAL
HISTONE A1-2 >gi|7482907|pir||D69436 archaeal histone
A1 (hpyA1-2) homolog - Archaeoglobus fulgidus
>gi|2649069|gb|AAB89751.1| (AE000999) archaeal histone
A1 (hpyA1-2) [Archaeoglobus fulgidus]
Length = 67
Score = 93.2 bits (228), Expect = 3e-19
Identities = 46/65 (70%), Positives = 54/65 (82%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELP+APVDRLIRKAGAERVS A + + E LE+YAI VAKKAVE A+H+GRKTV +D
Sbjct: 1 MAELPMAPVDRLIRKAGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADD 60
Query: 61 IKLAI 65
IKLA+
Sbjct: 61 IKLAL 65
>sp|Q57632|HJA1_METJA PROBABLE ARCHAEAL HISTONE 1 >gi|2127762|pir||A64321 archaeal
histone - Methanococcus jannaschii
>gi|1498941|gb|AAB98153.1| (U67474) archaeal histone A1
[Methanococcus jannaschii]
Length = 67
Score = 93.2 bits (228), Expect = 3e-19
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELP+AP +R+++KAGAERVS AA+ LAE +EE A+E+AK+AVE A+HA RKTVKVED
Sbjct: 1 MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 61 IKLAIK 66
IKLA+K
Sbjct: 61 IKLALK 66
>gi|11497949 archaeal histone A1 (hpyA1-1) [Archaeoglobus fulgidus]
>gi|6685482|sp|O29910|HAF1_ARCFU PROBABLE ARCHAEAL
HISTONE A1-1 >gi|7482906|pir||A69292 archaeal histone
A1 (hpyA1-1) homolog - Archaeoglobus fulgidus
>gi|2650302|gb|AAB90902.1| (AE001081) archaeal histone
A1 (hpyA1-1) [Archaeoglobus fulgidus]
Length = 72
Score = 91.3 bits (223), Expect = 1e-18
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 3 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIK 62
ELP+APV+RL+RKAGA RVSE A LA+ +EEYA+++ KKA E A+HAGRKTVKV+DIK
Sbjct: 7 ELPLAPVERLLRKAGASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDIK 66
Query: 63 LAIK 66
LA++
Sbjct: 67 LALR 70
>gi|10954491 archaeal histone [Methanococcus jannaschii]
>gi|2495253|sp|Q60264|HJA4_METJA PROBABLE ARCHAEAL
HISTONE 4 >gi|2127765|pir||D64513 archaeal histone,
extrachromosomal - Methanococcus jannaschii plasmid
pURB800 >gi|1500647|gb|AAC37073.1| (L77118) archaeal
histone [Methanococcus jannaschii]
Length = 67
Score = 89.3 bits (218), Expect = 4e-18
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELP+AP +R+++K GAERVS AA+ LAE EE A+E+AK+AV+ A+HA RKTVKVED
Sbjct: 1 MTELPVAPFERILKKVGAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVED 60
Query: 61 IKLAIK 66
IKLA+K
Sbjct: 61 IKLALK 66
>sp|P48783|HFO2_METFO ARCHAEAL HISTONE A2 >gi|530865|gb|AAA67722.1| (U12931) archaeal
histone [Methanobacterium formicicum]
Length = 68
Score = 88.9 bits (217), Expect = 6e-18
Identities = 43/67 (64%), Positives = 55/67 (81%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPV R+I+ AGA+R+S+ A + LA+ LEE E+AKKAVE A+HAGRKTVK ED
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAED 60
Query: 61 IKLAIKS 67
I++A+KS
Sbjct: 61 IEMAVKS 67
>sp|Q58655|HJA3_METJA PROBABLE ARCHAEAL HISTONE 3 >gi|2127763|pir||A64457 archaeal
histone - Methanococcus jannaschii
>gi|1591892|gb|AAB99261.1| (U67566) archaeal histone A3
[Methanococcus jannaschii]
Length = 67
Score = 86.2 bits (210), Expect = 4e-17
Identities = 40/66 (60%), Positives = 54/66 (81%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELP+AP R+++KAGA+RVSE A K AE LEE A+E+A+K+V+ A+HA RKTVKVED
Sbjct: 1 MAELPVAPCVRILKKAGAQRVSEAAGKYFAEALEEIALEIARKSVDLAKHAKRKTVKVED 60
Query: 61 IKLAIK 66
+K A++
Sbjct: 61 VKAALR 66
>sp|P48781|HMFA_METFE DNA BINDING PROTEIN HMF-1 (ARCHAEAL HISTONE A)
>gi|11357083|pir||T48848 histone Hmf1 [imported] -
Methanothermus fervidus >gi|4699737|pdb|1HTA| Crystal
Structure Of The Histone Hmfa From Methanothermus
Fervidus >gi|149794|gb|AAA73366.1| (M96826) histone
Hmf1 [Methanothermus fervidus]
Length = 69
Score = 83.9 bits (204), Expect = 2e-16
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
MGELPIAP+ R+I+ AGAERVS+ A LA+ LEE E+A +AV+ A+HAGRKT+K ED
Sbjct: 1 MGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 61 IKLAIK 66
I+LA K
Sbjct: 61 IELARK 66
>sp|O27731|HMT2_METTH DNA BINDING PROTEIN HMT-1.2 (ARCHAEAL HISTONE A2)
>gi|7482323|pir||G69093 histone HMtA2 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622827|gb|AAB86168.1| (AE000927) histone HMtA2
[Methanobacterium thermoautotrophicum]
Length = 68
Score = 82.7 bits (201), Expect = 4e-16
Identities = 40/66 (60%), Positives = 52/66 (78%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPV R+I+ AGA+R+S+ A + LA+ LEE E+AK+AV+ A+HAGRKTVK D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAREALAKILEEKGEEIAKEAVKLAKHAGRKTVKASD 60
Query: 61 IKLAIK 66
I+LA K
Sbjct: 61 IELAAK 66
>sp|P50483|HMT1_METTH DNA BINDING PROTEIN HMT-1.1 (ARCHAEAL HISTONE A1)
>gi|421695|pir||B47036 histone-related protein HMt1 -
Methanobacterium thermoautotrophicum
>gi|7482324|pir||G69209 histone-related protein HMtA1 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|149723|gb|AAA73227.1| (M90086) DNA-binding protein
[Methanobacterium thermoautotrophicum]
>gi|2621912|gb|AAB85321.1| (AE000859) histone HMtA1
[Methanobacterium thermoautotrophicum]
Length = 68
Score = 82.3 bits (200), Expect = 6e-16
Identities = 39/66 (59%), Positives = 52/66 (78%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPV R+I+ AGA+R+S+ A + LA+ LEE E+++KAVE A+HAGRKTVK D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATD 60
Query: 61 IKLAIK 66
I++A K
Sbjct: 61 IEMAAK 66
>pir||A47036 histone-related protein HMf1 - Methanothermus fervidus
Length = 69
Score = 82.3 bits (200), Expect = 6e-16
Identities = 40/66 (60%), Positives = 52/66 (78%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
+GELPIAP+ R+I+ AGAERVS+ A LA+ LEE E+A +AV+ A+HAGRKT+K ED
Sbjct: 1 VGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 61 IKLAIK 66
I+LA K
Sbjct: 61 IELARK 66
>pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus >gi|6980538|pdb|1B67|A Chain A,
Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 81.9 bits (199), Expect = 7e-16
Identities = 40/65 (61%), Positives = 51/65 (77%)
Query: 2 GELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDI 61
GELPIAP+ R+I+ AGAERVS+ A LA+ LEE E+A +AV+ A+HAGRKT+K EDI
Sbjct: 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60
Query: 62 KLAIK 66
+LA K
Sbjct: 61 ELARK 65
>sp|P19267|HMFB_METFE DNA BINDING PROTEIN HMF-2 (ARCHAEAL HISTONE B)
>gi|7482869|pir||A35959 archaeal histone HMf2
[validated] - Methanothermus fervidus
>gi|1310900|pdb|1BFM|A Chain A, Histone B From
Methanothermus Fervidus >gi|1310901|pdb|1BFM|B Chain B,
Histone B From Methanothermus Fervidus
>gi|4699718|pdb|1A7W| Crystal Structure Of The Histone
Hmfb From Methanothermus Fervidus
>gi|149790|gb|AAA72080.1| (M34778) DNA-binding protein
[Methanothermus fervidus]
Length = 69
Score = 80.0 bits (194), Expect = 3e-15
Identities = 37/64 (57%), Positives = 51/64 (78%)
Query: 3 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIK 62
ELPIAP+ R+I+ AGAERVS+ A LA+ LEE ++A +A++ ARHAGRKT+K EDI+
Sbjct: 2 ELPIAPIGRIIKDAGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIE 61
Query: 63 LAIK 66
LA++
Sbjct: 62 LAVR 65
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 80.0 bits (194), Expect = 3e-15
Identities = 37/64 (57%), Positives = 51/64 (78%)
Query: 3 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIK 62
ELPIAP+ R+I+ AGAERVS+ A LA+ LEE ++A +A++ ARHAGRKT+K EDI+
Sbjct: 2 ELPIAPIGRIIKDAGAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDIE 61
Query: 63 LAIK 66
LA++
Sbjct: 62 LAVR 65
>sp|P48784|HFOB_METFO ARCHAEAL HISTONE B >gi|530861|gb|AAA67720.1| (U12929) archaeal
histone [Methanobacterium formicicum]
Length = 67
Score = 78.0 bits (189), Expect = 1e-14
Identities = 37/64 (57%), Positives = 50/64 (77%)
Query: 3 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIK 62
ELPIAP+ R+I+ AGAERVS+ A + LA+ LEE +A +AV+ A+HAGRKTVK D++
Sbjct: 2 ELPIAPIGRIIKNAGAERVSDDAREALAKALEEKGETIATEAVKLAKHAGRKTVKASDVE 61
Query: 63 LAIK 66
LA+K
Sbjct: 62 LAVK 65
>sp|P48782|HFO1_METFO ARCHAEAL HISTONE A1 >gi|530863|gb|AAA67721.1| (U12930) archaeal
histone [Methanobacterium formicicum]
Length = 68
Score = 77.6 bits (188), Expect = 1e-14
Identities = 38/67 (56%), Positives = 50/67 (73%)
Query: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
M ELPIAPV R+I+ AGA RVS+ A LA+ LEE +A +AV+ A+HAGRKTVK D
Sbjct: 1 MAELPIAPVGRIIKNAGAPRVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASD 60
Query: 61 IKLAIKS 67
I++A+K+
Sbjct: 61 IEMAVKA 67
>sp|P50484|HMTB_METTH DNA BINDING PROTEIN HMT-2 (ARCHAEAL HISTONE A)
>gi|421696|pir||C47036 archaeal histone HMt2 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|149725|gb|AAA73196.1| (M86663) DNA-binding protein
[Methanobacterium thermoautotrophicum]
Length = 67
Score = 76.1 bits (184), Expect = 4e-14
Identities = 37/64 (57%), Positives = 49/64 (75%)
Query: 3 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIK 62
ELPIAP+ R+I+ AGAE VS+ A + LA+ LE E+A+ AV+ A+HAGRKTVK DI+
Sbjct: 2 ELPIAPIGRIIKNAGAEIVSDDAREALAKVLEAKGEEIAENAVKLAKHAGRKTVKASDIE 61
Query: 63 LAIK 66
LA+K
Sbjct: 62 LAVK 65
>gb|AAB84760.1| (AE000812) histone HMtB [Methanobacterium thermoautotrophicum]
Length = 72
Score = 76.1 bits (184), Expect = 4e-14
Identities = 37/64 (57%), Positives = 49/64 (75%)
Query: 3 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVEDIK 62
ELPIAP+ R+I+ AGAE VS+ A + LA+ LE E+A+ AV+ A+HAGRKTVK DI+
Sbjct: 7 ELPIAPIGRIIKNAGAEIVSDDAREALAKVLEAKGEEIAENAVKLAKHAGRKTVKASDIE 66
Query: 63 LAIK 66
LA+K
Sbjct: 67 LAVK 70
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.131 0.336
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18073124
Number of Sequences: 2977
Number of extensions: 453524
Number of successful extensions: 2510
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2478
Number of HSP's gapped (non-prelim): 31
length of query: 67
length of database: 189,106,746
effective HSP length: 46
effective length of query: 21
effective length of database: 161,576,344
effective search space: 3393103224
effective search space used: 3393103224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)