BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3103 (PAB3103) DE:Hypothetical protein
         (79 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75155 hypothetical protein PAB3103 - Pyrococcus abyssi (st...   157  1e-38
gi|11499579 conserved hypothetical protein [Archaeoglobus fulgid...    95  1e-19
sp|Q58522|YB22_METJA HYPOTHETICAL PROTEIN MJ1122 >gi|2128679|pir...    88  1e-17
pir||C71100 hypothetical protein PHS031 - Pyrococcus horikoshii ...    73  4e-13

>pir||G75155 hypothetical protein PAB3103 - Pyrococcus abyssi (strain Orsay)
          >gi|5457836|emb|CAB49326.1| (AJ248284) hypothetical
          protein [Pyrococcus abyssi]
          Length = 79
          
 Score =  157 bits (393), Expect = 1e-38
 Identities = 78/79 (98%), Positives = 79/79 (99%)

Query: 1  VISLSKTITIADDVYYELVKMKGNKSFSELLRELIGKKKKGNLDILMIAFGTMSEEEVKE 60
          +ISLSKTITIADDVYYELVKMKGNKSFSELLRELIGKKKKGNLDILMIAFGTMSEEEVKE
Sbjct: 1  MISLSKTITIADDVYYELVKMKGNKSFSELLRELIGKKKKGNLDILMIAFGTMSEEEVKE 60

Query: 61 FKKKIKEVEEWINSWTPVS 79
          FKKKIKEVEEWINSWTPVS
Sbjct: 61 FKKKIKEVEEWINSWTPVS 79


>gi|11499579 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|3123136|sp|O28282|YJ97_ARCFU HYPOTHETICAL PROTEIN
          AF1997 >gi|7450172|pir||D69499 conserved hypothetical
          protein AF1997 - Archaeoglobus fulgidus
          >gi|2648547|gb|AAB89264.1| (AE000965) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 73
          
 Score = 94.8 bits (232), Expect = 1e-19
 Identities = 44/71 (61%), Positives = 62/71 (86%), Gaps = 2/71 (2%)

Query: 4  LSKTITIADDVYYELVKMKGNKSFSELLRELIGKKKKGNLDILMIAFGTMSEEEVKEFKK 63
          ++KTI+I+DDVY  LVK+KG +SFSE++REL+  KK+GN D+LM+AFGT SEEEV++ K+
Sbjct: 1  MTKTISISDDVYEMLVKIKGKRSFSEVIRELV--KKEGNFDLLMVAFGTRSEEEVEKLKR 58

Query: 64 KIKEVEEWINS 74
          ++KEVEEW+ S
Sbjct: 59 EMKEVEEWMQS 69


>sp|Q58522|YB22_METJA HYPOTHETICAL PROTEIN MJ1122 >gi|2128679|pir||A64440 hypothetical
          protein MJ1122 - Methanococcus jannaschii
          >gi|1591761|gb|AAB99124.1| (U67555) conserved
          hypothetical protein [Methanococcus jannaschii]
          Length = 77
          
 Score = 87.8 bits (214), Expect = 1e-17
 Identities = 39/68 (57%), Positives = 56/68 (82%)

Query: 7  TITIADDVYYELVKMKGNKSFSELLRELIGKKKKGNLDILMIAFGTMSEEEVKEFKKKIK 66
          TITI DDVY EL+K+KG KS SE ++EL+ ++K+ NLD+ MIAFG+ SEE+V++ KK++K
Sbjct: 6  TITIDDDVYKELLKLKGRKSVSEFIKELLEERKRKNLDVFMIAFGSRSEEDVEKLKKELK 65

Query: 67 EVEEWINS 74
          E E+W+ S
Sbjct: 66 EAEKWMQS 73


>pir||C71100 hypothetical protein PHS031 - Pyrococcus horikoshii
          >gi|3257478|dbj|BAA30161.1| (AP000004) 52aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 52
          
 Score = 73.0 bits (176), Expect = 4e-13
 Identities = 35/41 (85%), Positives = 39/41 (94%)

Query: 1  VISLSKTITIADDVYYELVKMKGNKSFSELLRELIGKKKKG 41
          V S+SKTITIADDVYYELVKMKG +SFSE+LRELIGKKK+G
Sbjct: 8  VTSMSKTITIADDVYYELVKMKGKRSFSEVLRELIGKKKEG 48


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.132    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29228781
Number of Sequences: 2977
Number of extensions: 1008923
Number of successful extensions: 5135
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5131
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 189,106,746
effective HSP length: 58
effective length of query: 21
effective length of database: 154,394,500
effective search space: 3242284500
effective search space used: 3242284500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 156 (65.2 bits)