BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3117 (hpyA1-2) DE:ARCHAEAL HISTONE A2. / archaeal histone A1
(hpyA1-2)
         (67 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75164 archaeal histone a2. / archaeal histone a1 (hpya1-2)...   127  1e-29
pir||H71177 probable archaeal histon - Pyrococcus horikoshii >gi...   126  2e-29
sp|O74092|HPHB_PYRHO PROBABLE ARCHAEAL HISTONE B                      126  2e-29
sp|P50486|HPY2_PYRSG ARCHAEAL HISTONE A2 >gi|484073|gb|AAA73427....   123  2e-28
sp|O59627|HPFB_PYRFU ARCHAEAL HISTONE B                               121  8e-28
dbj|BAA25805.1| (AB013081) archaeal histone [Pyrococcus furiosus]     121  8e-28
sp|Q9Y8I2|HPKB_PYRKO ARCHAEAL HISTONE B >gi|4808452|dbj|BAA77576...   115  6e-26
pir||F71188 probable archaeal histon - Pyrococcus horikoshii >gi...   111  1e-24
sp|O74098|HPHA_PYRHO PROBABLE ARCHAEAL HISTONE A                      111  1e-24
pir||F75148 histone-like protein han1 chain PAB3089 - Pyrococcus...   110  2e-24
sp|Q9Y8I1|HPKA_PYRKO ARCHAEAL HISTONE A >gi|4808450|dbj|BAA77575...   108  6e-24
sp|P50485|HPY1_PYRSG ARCHAEAL HISTONE A1 >gi|484071|gb|AAA73426....   108  8e-24
sp|P95669|HANA_THEZI ARCHAEAL HISTONE HAN1 SUBUNIT A >gi|7515013...   102  5e-22
sp|Q58655|HJA3_METJA PROBABLE ARCHAEAL HISTONE 3 >gi|2127763|pir...    95  1e-19
sp|Q58342|HJA2_METJA PROBABLE ARCHAEAL HISTONE 2 >gi|2127764|pir...    94  1e-19
sp|Q57632|HJA1_METJA PROBABLE ARCHAEAL HISTONE 1 >gi|2127762|pir...    94  1e-19
sp|P48783|HFO2_METFO ARCHAEAL HISTONE A2 >gi|530865|gb|AAA67722....    92  5e-19
gi|10954491 archaeal histone [Methanococcus jannaschii] >gi|2495...    92  5e-19
gi|11497949 archaeal histone A1 (hpyA1-1) [Archaeoglobus fulgidu...    90  2e-18
gi|11499088 archaeal histone A1 (hpyA1-2) [Archaeoglobus fulgidu...    89  7e-18
sp|O27731|HMT2_METTH DNA BINDING PROTEIN HMT-1.2 (ARCHAEAL HISTO...    88  1e-17
sp|P50483|HMT1_METTH DNA BINDING PROTEIN HMT-1.1 (ARCHAEAL HISTO...    85  9e-17
sp|P48781|HMFA_METFE DNA BINDING PROTEIN HMF-1 (ARCHAEAL HISTONE...    80  2e-15
sp|P48784|HFOB_METFO ARCHAEAL HISTONE B >gi|530861|gb|AAA67720.1...    80  3e-15
sp|P19267|HMFB_METFE DNA BINDING PROTEIN HMF-2 (ARCHAEAL HISTONE...    79  6e-15
pir||A47036 histone-related protein HMf1 - Methanothermus fervidus     79  6e-15
sp|P48782|HFO1_METFO ARCHAEAL HISTONE A1 >gi|530863|gb|AAA67721....    79  6e-15
pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Va...    79  6e-15
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From M...    78  8e-15
sp|P50484|HMTB_METTH DNA BINDING PROTEIN HMT-2 (ARCHAEAL HISTONE...    77  2e-14
gb|AAB84760.1| (AE000812) histone HMtB [Methanobacterium thermoa...    77  2e-14

>pir||C75164 archaeal histone a2. / archaeal histone a1 (hpya1-2) PAB3117 -
          Pyrococcus abyssi (strain Orsay)
          >gi|5457904|emb|CAB49394.1| (AJ248284) ARCHAEAL HISTONE
          A2. / archaeal histone A1 (hpyA1-2) [Pyrococcus abyssi]
          Length = 67
          
 Score =  127 bits (317), Expect = 1e-29
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED
Sbjct: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60

Query: 61 IKLAIRS 67
          IKLAIRS
Sbjct: 61 IKLAIRS 67


>pir||H71177 probable archaeal histon - Pyrococcus horikoshii
          >gi|3258132|dbj|BAA30815.1| (AP000007) 70aa long
          hypothetical archaeal histon [Pyrococcus horikoshii]
          Length = 70
          
 Score =  126 bits (314), Expect = 2e-29
 Identities = 66/67 (98%), Positives = 67/67 (99%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIA+KAVDLAKHAGRKTVKVED
Sbjct: 4  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVED 63

Query: 61 IKLAIRS 67
          IKLAIRS
Sbjct: 64 IKLAIRS 70


>sp|O74092|HPHB_PYRHO PROBABLE ARCHAEAL HISTONE B
          Length = 67
          
 Score =  126 bits (314), Expect = 2e-29
 Identities = 66/67 (98%), Positives = 67/67 (99%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIA+KAVDLAKHAGRKTVKVED
Sbjct: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVED 60

Query: 61 IKLAIRS 67
          IKLAIRS
Sbjct: 61 IKLAIRS 67


>sp|P50486|HPY2_PYRSG ARCHAEAL HISTONE A2 >gi|484073|gb|AAA73427.1| (U08838) archaeal
          histone [Pyrococcus sp.]
          Length = 67
          
 Score =  123 bits (306), Expect = 2e-28
 Identities = 64/67 (95%), Positives = 66/67 (97%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPVDRLIRKAGAQRVSE+AAKLLAEHLEEKALEIA+KAVDLAKHAGRKTVK ED
Sbjct: 1  MAELPIAPVDRLIRKAGAQRVSEQAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKAED 60

Query: 61 IKLAIRS 67
          IKLAIRS
Sbjct: 61 IKLAIRS 67


>sp|O59627|HPFB_PYRFU ARCHAEAL HISTONE B
          Length = 67
          
 Score =  121 bits (301), Expect = 8e-28
 Identities = 62/67 (92%), Positives = 66/67 (97%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAPVDRLIRKAGAQRVSE+AAK+LAEHLEEKA+EIAKKAVDLAKHAGRKTVKVED
Sbjct: 1  MGELPIAPVDRLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVED 60

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 61 IKLAIKS 67


>dbj|BAA25805.1| (AB013081) archaeal histone [Pyrococcus furiosus]
          Length = 68
          
 Score =  121 bits (301), Expect = 8e-28
 Identities = 62/67 (92%), Positives = 66/67 (97%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAPVDRLIRKAGAQRVSE+AAK+LAEHLEEKA+EIAKKAVDLAKHAGRKTVKVED
Sbjct: 2  MGELPIAPVDRLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVED 61

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 62 IKLAIKS 68


>sp|Q9Y8I2|HPKB_PYRKO ARCHAEAL HISTONE B >gi|4808452|dbj|BAA77576.1| (AB016004)
          archaeal histone HPkB [Pyrococcus kodakaraensis]
          Length = 67
          
 Score =  115 bits (285), Expect = 6e-26
 Identities = 60/67 (89%), Positives = 64/67 (94%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPVDRLIRKAGA RVSE+AAK+LAEHLEEKALEIAKKAV LA+HAGRKTVK ED
Sbjct: 1  MAELPIAPVDRLIRKAGAARVSEEAAKVLAEHLEEKALEIAKKAVALAQHAGRKTVKAED 60

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 61 IKLAIKS 67


>pir||F71188 probable archaeal histon - Pyrococcus horikoshii
          >gi|3258218|dbj|BAA30901.1| (AP000007) 70aa long
          hypothetical archaeal histon [Pyrococcus horikoshii]
          Length = 70
          
 Score =  111 bits (274), Expect = 1e-24
 Identities = 56/67 (83%), Positives = 64/67 (94%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+EIAKKAV+ A+HAGRKTVKVED
Sbjct: 4  MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVED 63

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 64 IKLAIKS 70


>sp|O74098|HPHA_PYRHO PROBABLE ARCHAEAL HISTONE A
          Length = 67
          
 Score =  111 bits (274), Expect = 1e-24
 Identities = 56/67 (83%), Positives = 64/67 (94%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+EIAKKAV+ A+HAGRKTVKVED
Sbjct: 1  MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVED 60

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 61 IKLAIKS 67


>pir||F75148 histone-like protein han1 chain PAB3089 - Pyrococcus abyssi
          (strain Orsay) >gi|5457779|emb|CAB49269.1| (AJ248284)
          HISTONE-LIKE PROTEIN HAN1 SUBUNIT [Pyrococcus abyssi]
          Length = 67
          
 Score =  110 bits (273), Expect = 2e-24
 Identities = 55/67 (82%), Positives = 64/67 (95%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+E+AKKAV+ A+HAGRKTVKVED
Sbjct: 1  MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 61 IKLAIKS 67


>sp|Q9Y8I1|HPKA_PYRKO ARCHAEAL HISTONE A >gi|4808450|dbj|BAA77575.1| (AB016003)
          archaeal histone HPkA [Pyrococcus kodakaraensis]
          Length = 67
          
 Score =  108 bits (268), Expect = 6e-24
 Identities = 54/67 (80%), Positives = 63/67 (93%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPVDRLIRKAGA+RVSE AAK+LAE+LEE A+E++KKAVD A+HAGRKTVK ED
Sbjct: 1  MAELPIAPVDRLIRKAGAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAED 60

Query: 61 IKLAIRS 67
          IKLAI++
Sbjct: 61 IKLAIKA 67


>sp|P50485|HPY1_PYRSG ARCHAEAL HISTONE A1 >gi|484071|gb|AAA73426.1| (U08837) archaeal
          histone [Pyrococcus sp.]
          Length = 67
          
 Score =  108 bits (267), Expect = 8e-24
 Identities = 53/67 (79%), Positives = 63/67 (93%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAPVDRLIRKAGA+RVSE+AAK+LAE+LEE A+E++KKAV+ A+HAGRKTVK ED
Sbjct: 1  MGELPIAPVDRLIRKAGAERVSEEAAKILAEYLEEYAIEVSKKAVEFARHAGRKTVKAED 60

Query: 61 IKLAIRS 67
          IKLAI+S
Sbjct: 61 IKLAIKS 67


>sp|P95669|HANA_THEZI ARCHAEAL HISTONE HAN1 SUBUNIT A >gi|7515013|pir||S71485
          histone-like protein HAN1 chain A1 - Thermococcus sp.
          (strain AN1) >gi|2072943|gb|AAB53861.1| (U93078)
          histone-like protein HAN1 A subunit [Thermococcus
          zilligii]
          Length = 67
          
 Score =  102 bits (252), Expect = 5e-22
 Identities = 48/67 (71%), Positives = 60/67 (88%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAP+DRLIRKAGA+RVSE AAK LAE+LEE A+E+ KKA + A+HAGRKTVK ED
Sbjct: 1  MAELPIAPIDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAED 60

Query: 61 IKLAIRS 67
          ++LA+++
Sbjct: 61 VRLAVKA 67


>sp|Q58655|HJA3_METJA PROBABLE ARCHAEAL HISTONE 3 >gi|2127763|pir||A64457 archaeal
          histone - Methanococcus jannaschii
          >gi|1591892|gb|AAB99261.1| (U67566) archaeal histone A3
          [Methanococcus jannaschii]
          Length = 67
          
 Score = 94.8 bits (232), Expect = 1e-19
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELP+AP  R+++KAGAQRVSE A K  AE LEE ALEIA+K+VDLAKHA RKTVKVED
Sbjct: 1  MAELPVAPCVRILKKAGAQRVSEAAGKYFAEALEEIALEIARKSVDLAKHAKRKTVKVED 60

Query: 61 IKLAIR 66
          +K A+R
Sbjct: 61 VKAALR 66


>sp|Q58342|HJA2_METJA PROBABLE ARCHAEAL HISTONE 2 >gi|2127764|pir||D64416 archaeal
          histone - Methanococcus jannaschii
          >gi|1591603|gb|AAB98934.1| (U67536) archaeal histone A2
          [Methanococcus jannaschii]
          Length = 67
          
 Score = 94.4 bits (231), Expect = 1e-19
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELP+AP +R+++KAGA+RVS  AA+ LAE +EE ALEIAK+AV+LAKHA RKTVKVED
Sbjct: 1  MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60

Query: 61 IKLAIR 66
          IKLA++
Sbjct: 61 IKLALK 66


>sp|Q57632|HJA1_METJA PROBABLE ARCHAEAL HISTONE 1 >gi|2127762|pir||A64321 archaeal
          histone - Methanococcus jannaschii
          >gi|1498941|gb|AAB98153.1| (U67474) archaeal histone A1
          [Methanococcus jannaschii]
          Length = 67
          
 Score = 94.4 bits (231), Expect = 1e-19
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELP+AP +R+++KAGA+RVS  AA+ LAE +EE ALEIAK+AV+LAKHA RKTVKVED
Sbjct: 1  MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60

Query: 61 IKLAIR 66
          IKLA++
Sbjct: 61 IKLALK 66


>sp|P48783|HFO2_METFO ARCHAEAL HISTONE A2 >gi|530865|gb|AAA67722.1| (U12931) archaeal
          histone [Methanobacterium formicicum]
          Length = 68
          
 Score = 92.4 bits (226), Expect = 5e-19
 Identities = 45/67 (67%), Positives = 57/67 (84%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPV R+I+ AGAQR+S+ A + LA+ LEE   E+AKKAV+LAKHAGRKTVK ED
Sbjct: 1  MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAED 60

Query: 61 IKLAIRS 67
          I++A++S
Sbjct: 61 IEMAVKS 67


>gi|10954491 archaeal histone [Methanococcus jannaschii]
          >gi|2495253|sp|Q60264|HJA4_METJA PROBABLE ARCHAEAL
          HISTONE 4 >gi|2127765|pir||D64513 archaeal histone,
          extrachromosomal - Methanococcus jannaschii plasmid
          pURB800 >gi|1500647|gb|AAC37073.1| (L77118) archaeal
          histone [Methanococcus jannaschii]
          Length = 67
          
 Score = 92.4 bits (226), Expect = 5e-19
 Identities = 46/66 (69%), Positives = 56/66 (84%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELP+AP +R+++K GA+RVS  AA+ LAE  EE ALEIAK+AVDLAKHA RKTVKVED
Sbjct: 1  MTELPVAPFERILKKVGAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVED 60

Query: 61 IKLAIR 66
          IKLA++
Sbjct: 61 IKLALK 66


>gi|11497949 archaeal histone A1 (hpyA1-1) [Archaeoglobus fulgidus]
          >gi|6685482|sp|O29910|HAF1_ARCFU PROBABLE ARCHAEAL
          HISTONE A1-1 >gi|7482906|pir||A69292 archaeal histone
          A1 (hpyA1-1) homolog - Archaeoglobus fulgidus
          >gi|2650302|gb|AAB90902.1| (AE001081) archaeal histone
          A1 (hpyA1-1) [Archaeoglobus fulgidus]
          Length = 72
          
 Score = 90.5 bits (221), Expect = 2e-18
 Identities = 45/64 (70%), Positives = 55/64 (85%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELP+APV+RL+RKAGA RVSE A   LA+ +EE A++I KKA +LAKHAGRKTVKV+DIK
Sbjct: 7  ELPLAPVERLLRKAGASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDIK 66

Query: 63 LAIR 66
          LA+R
Sbjct: 67 LALR 70


>gi|11499088 archaeal histone A1 (hpyA1-2) [Archaeoglobus fulgidus]
          >gi|6685481|sp|O28779|HAF2_ARCFU PROBABLE ARCHAEAL
          HISTONE A1-2 >gi|7482907|pir||D69436 archaeal histone
          A1 (hpyA1-2) homolog - Archaeoglobus fulgidus
          >gi|2649069|gb|AAB89751.1| (AE000999) archaeal histone
          A1 (hpyA1-2) [Archaeoglobus fulgidus]
          Length = 67
          
 Score = 88.5 bits (216), Expect = 7e-18
 Identities = 43/65 (66%), Positives = 55/65 (84%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELP+APVDRLIRKAGA+RVS  A + + E LE+ A+ +AKKAV++AKH+GRKTV  +D
Sbjct: 1  MAELPMAPVDRLIRKAGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADD 60

Query: 61 IKLAI 65
          IKLA+
Sbjct: 61 IKLAL 65


>sp|O27731|HMT2_METTH DNA BINDING PROTEIN HMT-1.2 (ARCHAEAL HISTONE A2)
          >gi|7482323|pir||G69093 histone HMtA2 -
          Methanobacterium thermoautotrophicum (strain Delta H)
          >gi|2622827|gb|AAB86168.1| (AE000927) histone HMtA2
          [Methanobacterium thermoautotrophicum]
          Length = 68
          
 Score = 87.8 bits (214), Expect = 1e-17
 Identities = 45/66 (68%), Positives = 54/66 (81%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPV R+I+ AGAQR+S+ A + LA+ LEEK  EIAK+AV LAKHAGRKTVK  D
Sbjct: 1  MAELPIAPVGRIIKNAGAQRISDDAREALAKILEEKGEEIAKEAVKLAKHAGRKTVKASD 60

Query: 61 IKLAIR 66
          I+LA +
Sbjct: 61 IELAAK 66


>sp|P50483|HMT1_METTH DNA BINDING PROTEIN HMT-1.1 (ARCHAEAL HISTONE A1)
          >gi|421695|pir||B47036 histone-related protein HMt1 -
          Methanobacterium thermoautotrophicum
          >gi|7482324|pir||G69209 histone-related protein HMtA1 -
          Methanobacterium thermoautotrophicum (strain Delta H)
          >gi|149723|gb|AAA73227.1| (M90086) DNA-binding protein
          [Methanobacterium thermoautotrophicum]
          >gi|2621912|gb|AAB85321.1| (AE000859) histone HMtA1
          [Methanobacterium thermoautotrophicum]
          Length = 68
          
 Score = 85.0 bits (207), Expect = 9e-17
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPV R+I+ AGAQR+S+ A + LA+ LEE   EI++KAV+LAKHAGRKTVK  D
Sbjct: 1  MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATD 60

Query: 61 IKLAIR 66
          I++A +
Sbjct: 61 IEMAAK 66


>sp|P48781|HMFA_METFE DNA BINDING PROTEIN HMF-1 (ARCHAEAL HISTONE A)
          >gi|11357083|pir||T48848 histone Hmf1 [imported] -
          Methanothermus fervidus >gi|4699737|pdb|1HTA|  Crystal
          Structure Of The Histone Hmfa From Methanothermus
          Fervidus >gi|149794|gb|AAA73366.1| (M96826) histone
          Hmf1 [Methanothermus fervidus]
          Length = 69
          
 Score = 80.4 bits (195), Expect = 2e-15
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          M ELPIAP+ R+I+ AGA+RVS+ A   LA+ LEE   EIA +AV LAKHAGRKT+K ED
Sbjct: 1  MGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60

Query: 61 IKLA 64
          I+LA
Sbjct: 61 IELA 64


>sp|P48784|HFOB_METFO ARCHAEAL HISTONE B >gi|530861|gb|AAA67720.1| (U12929) archaeal
          histone [Methanobacterium formicicum]
          Length = 67
          
 Score = 80.0 bits (194), Expect = 3e-15
 Identities = 39/64 (60%), Positives = 51/64 (78%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELPIAP+ R+I+ AGA+RVS+ A + LA+ LEEK   IA +AV LAKHAGRKTVK  D++
Sbjct: 2  ELPIAPIGRIIKNAGAERVSDDAREALAKALEEKGETIATEAVKLAKHAGRKTVKASDVE 61

Query: 63 LAIR 66
          LA++
Sbjct: 62 LAVK 65


>sp|P19267|HMFB_METFE DNA BINDING PROTEIN HMF-2 (ARCHAEAL HISTONE B)
          >gi|7482869|pir||A35959 archaeal histone HMf2
          [validated] - Methanothermus fervidus
          >gi|1310900|pdb|1BFM|A Chain A, Histone B From
          Methanothermus Fervidus >gi|1310901|pdb|1BFM|B Chain B,
          Histone B From Methanothermus Fervidus
          >gi|4699718|pdb|1A7W|  Crystal Structure Of The Histone
          Hmfb From Methanothermus Fervidus
          >gi|149790|gb|AAA72080.1| (M34778) DNA-binding protein
          [Methanothermus fervidus]
          Length = 69
          
 Score = 78.8 bits (191), Expect = 6e-15
 Identities = 38/64 (59%), Positives = 51/64 (79%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELPIAP+ R+I+ AGA+RVS+ A   LA+ LEE   +IA +A+ LA+HAGRKT+K EDI+
Sbjct: 2  ELPIAPIGRIIKDAGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIE 61

Query: 63 LAIR 66
          LA+R
Sbjct: 62 LAVR 65


>pir||A47036 histone-related protein HMf1 - Methanothermus fervidus
          Length = 69
          
 Score = 78.8 bits (191), Expect = 6e-15
 Identities = 40/64 (62%), Positives = 50/64 (77%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          + ELPIAP+ R+I+ AGA+RVS+ A   LA+ LEE   EIA +AV LAKHAGRKT+K ED
Sbjct: 1  VGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60

Query: 61 IKLA 64
          I+LA
Sbjct: 61 IELA 64


>sp|P48782|HFO1_METFO ARCHAEAL HISTONE A1 >gi|530863|gb|AAA67721.1| (U12930) archaeal
          histone [Methanobacterium formicicum]
          Length = 68
          
 Score = 78.8 bits (191), Expect = 6e-15
 Identities = 41/67 (61%), Positives = 51/67 (75%)

Query: 1  MAELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVED 60
          MAELPIAPV R+I+ AGA RVS+ A   LA+ LEE    IA +AV LAKHAGRKTVK  D
Sbjct: 1  MAELPIAPVGRIIKNAGAPRVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASD 60

Query: 61 IKLAIRS 67
          I++A+++
Sbjct: 61 IEMAVKA 67


>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
          Histone Hmfb From Methanothermus Fervidus
          Length = 69
          
 Score = 78.8 bits (191), Expect = 6e-15
 Identities = 38/64 (59%), Positives = 51/64 (79%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELPIAP+ R+I+ AGA+RVS+ A   LA+ LEE   +IA +A+ LA+HAGRKT+K EDI+
Sbjct: 2  ELPIAPIGRIIKDAGAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDIE 61

Query: 63 LAIR 66
          LA+R
Sbjct: 62 LAVR 65


>pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
          Methanothermus Fervidus >gi|6980538|pdb|1B67|A Chain A,
          Crystal Structure Of The Histone Hmfa From
          Methanothermus Fervidus
          Length = 68
          
 Score = 78.4 bits (190), Expect = 8e-15
 Identities = 40/62 (64%), Positives = 49/62 (78%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELPIAP+ R+I+ AGA+RVS+ A   LA+ LEE   EIA +AV LAKHAGRKT+K EDI+
Sbjct: 2  ELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 61

Query: 63 LA 64
          LA
Sbjct: 62 LA 63


>sp|P50484|HMTB_METTH DNA BINDING PROTEIN HMT-2 (ARCHAEAL HISTONE A)
          >gi|421696|pir||C47036 archaeal histone HMt2 -
          Methanobacterium thermoautotrophicum (strain Delta H)
          >gi|149725|gb|AAA73196.1| (M86663) DNA-binding protein
          [Methanobacterium thermoautotrophicum]
          Length = 67
          
 Score = 77.3 bits (187), Expect = 2e-14
 Identities = 39/64 (60%), Positives = 50/64 (77%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELPIAP+ R+I+ AGA+ VS+ A + LA+ LE K  EIA+ AV LAKHAGRKTVK  DI+
Sbjct: 2  ELPIAPIGRIIKNAGAEIVSDDAREALAKVLEAKGEEIAENAVKLAKHAGRKTVKASDIE 61

Query: 63 LAIR 66
          LA++
Sbjct: 62 LAVK 65


>gb|AAB84760.1| (AE000812) histone HMtB [Methanobacterium thermoautotrophicum]
          Length = 72
          
 Score = 77.3 bits (187), Expect = 2e-14
 Identities = 39/64 (60%), Positives = 50/64 (77%)

Query: 3  ELPIAPVDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIK 62
          ELPIAP+ R+I+ AGA+ VS+ A + LA+ LE K  EIA+ AV LAKHAGRKTVK  DI+
Sbjct: 7  ELPIAPIGRIIKNAGAEIVSDDAREALAKVLEAKGEEIAENAVKLAKHAGRKTVKASDIE 66

Query: 63 LAIR 66
          LA++
Sbjct: 67 LAVK 70


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.130    0.327 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17658553
Number of Sequences: 2977
Number of extensions: 460562
Number of successful extensions: 3618
Number of sequences better than 1.0e-10: 31
Number of HSP's better than  0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3587
Number of HSP's gapped (non-prelim): 31
length of query: 67
length of database: 189,106,746
effective HSP length: 46
effective length of query: 21
effective length of database: 161,576,344
effective search space: 3393103224
effective search space used: 3393103224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)