BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3171 (PAB3171) DE:Hypothetical protein
         (84 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75113 hypothetical protein PAB3171 - Pyrococcus abyssi (st...   161  2e-39
pir||B75116 hypothetical protein PAB3177 - Pyrococcus abyssi (st...    85  1e-16
pir||D72280 conserved hypothetical protein - Thermotoga maritima...    77  4e-14

>pir||B75113 hypothetical protein PAB3171 - Pyrococcus abyssi (strain Orsay)
          >gi|5458130|emb|CAB49619.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 84
          
 Score =  161 bits (402), Expect = 2e-39
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MMSVNVYLILIAIATLLSMYRVFRGPTTVDRLVAVDIMTTITVGLMVLLALYYKRMIFLD 60
          MMSVNVYLILIAIATLLSMYRVFRGPTTVDRLVAVDIMTTITVGLMVLLALYYKRMIFLD
Sbjct: 1  MMSVNVYLILIAIATLLSMYRVFRGPTTVDRLVAVDIMTTITVGLMVLLALYYKRMIFLD 60

Query: 61 VALVYAVLSFAGVIAFARYLEGGL 84
          VALVYAVLSFAGVIAFARYLEGGL
Sbjct: 61 VALVYAVLSFAGVIAFARYLEGGL 84


>pir||B75116 hypothetical protein PAB3177 - Pyrococcus abyssi (strain Orsay)
          >gi|5458154|emb|CAB49643.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 88
          
 Score = 85.4 bits (208), Expect = 1e-16
 Identities = 38/76 (50%), Positives = 57/76 (75%)

Query: 9  ILIAIATLLSMYRVFRGPTTVDRLVAVDIMTTITVGLMVLLALYYKRMIFLDVALVYAVL 68
          +LI IA L+ + R+  GPTT DR+VA+D + T+ V  M+LL  YY+R I++D+A+VYA+L
Sbjct: 12 LLIGIAGLIVLLRLILGPTTSDRVVALDTLNTLVVAAMLLLGAYYERAIYIDIAIVYALL 71

Query: 69 SFAGVIAFARYLEGGL 84
          S+ G +  A+YL+GGL
Sbjct: 72 SYIGTLIIAKYLQGGL 87


>pir||D72280 conserved hypothetical protein - Thermotoga maritima (strain
          MSB8) >gi|4981759|gb|AAD36281.1|AE001778_2 (AE001778)
          conserved hypothetical protein [Thermotoga maritima]
          Length = 82
          
 Score = 76.9 bits (186), Expect = 4e-14
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 6  VYLILIAIATLLSMYRVFRGPTTVDRLVAVDIMTTITVGLMVLLALYYKRMIFLDVALVY 65
          ++ +L+    LLS  RV  GPT+ DR+ A+D M  +  GL+V LA  + R I+LD+ALVY
Sbjct: 4  LFFVLVGAGVLLSFIRVIIGPTSSDRVAALDTMNVMLTGLIVFLAYVFDRAIYLDIALVY 63

Query: 66 AVLSFAGVIAFARYLEG 82
          A+LSF   I  +RYLEG
Sbjct: 64 ALLSFLETIIVSRYLEG 80


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.337    0.148    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23157262
Number of Sequences: 2977
Number of extensions: 642188
Number of successful extensions: 3176
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3173
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 189,106,746
effective HSP length: 50
effective length of query: 34
effective length of database: 159,182,396
effective search space: 5412201464
effective search space used: 5412201464
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.7 bits)
S2: 157 (65.6 bits)