BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3177 (PAB3177) DE:Hypothetical protein
         (88 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75116 hypothetical protein PAB3177 - Pyrococcus abyssi (st...   167  3e-41
pir||D72280 conserved hypothetical protein - Thermotoga maritima...    86  9e-17
pir||B75113 hypothetical protein PAB3171 - Pyrococcus abyssi (st...    85  1e-16

>pir||B75116 hypothetical protein PAB3177 - Pyrococcus abyssi (strain Orsay)
          >gi|5458154|emb|CAB49643.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 88
          
 Score =  167 bits (418), Expect = 3e-41
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MTVEQMFLYATLLIGIAGLIVLLRLILGPTTSDRVVALDTLNTLVVAAMLLLGAYYERAI 60
          MTVEQMFLYATLLIGIAGLIVLLRLILGPTTSDRVVALDTLNTLVVAAMLLLGAYYERAI
Sbjct: 1  MTVEQMFLYATLLIGIAGLIVLLRLILGPTTSDRVVALDTLNTLVVAAMLLLGAYYERAI 60

Query: 61 YIDIAIVYALLSYIGTLIIAKYLQGGLS 88
          YIDIAIVYALLSYIGTLIIAKYLQGGLS
Sbjct: 61 YIDIAIVYALLSYIGTLIIAKYLQGGLS 88


>pir||D72280 conserved hypothetical protein - Thermotoga maritima (strain
          MSB8) >gi|4981759|gb|AAD36281.1|AE001778_2 (AE001778)
          conserved hypothetical protein [Thermotoga maritima]
          Length = 82
          
 Score = 85.8 bits (209), Expect = 9e-17
 Identities = 38/80 (47%), Positives = 61/80 (75%)

Query: 6  MFLYATLLIGIAGLIVLLRLILGPTTSDRVVALDTLNTLVVAAMLLLGAYYERAIYIDIA 65
          M L   +L+G   L+  +R+I+GPT+SDRV ALDT+N ++   ++ L   ++RAIY+DIA
Sbjct: 1  MSLLFFVLVGAGVLLSFIRVIIGPTSSDRVAALDTMNVMLTGLIVFLAYVFDRAIYLDIA 60

Query: 66 IVYALLSYIGTLIIAKYLQG 85
          +VYALLS++ T+I+++YL+G
Sbjct: 61 LVYALLSFLETIIVSRYLEG 80


>pir||B75113 hypothetical protein PAB3171 - Pyrococcus abyssi (strain Orsay)
          >gi|5458130|emb|CAB49619.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 84
          
 Score = 85.4 bits (208), Expect = 1e-16
 Identities = 38/76 (50%), Positives = 57/76 (75%)

Query: 12 LLIGIAGLIVLLRLILGPTTSDRVVALDTLNTLVVAAMLLLGAYYERAIYIDIAIVYALL 71
          +LI IA L+ + R+  GPTT DR+VA+D + T+ V  M+LL  YY+R I++D+A+VYA+L
Sbjct: 9  ILIAIATLLSMYRVFRGPTTVDRLVAVDIMTTITVGLMVLLALYYKRMIFLDVALVYAVL 68

Query: 72 SYIGTLIIAKYLQGGL 87
          S+ G +  A+YL+GGL
Sbjct: 69 SFAGVIAFARYLEGGL 84


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.147    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26038134
Number of Sequences: 2977
Number of extensions: 762751
Number of successful extensions: 3830
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3827
Number of HSP's gapped (non-prelim): 3
length of query: 88
length of database: 189,106,746
effective HSP length: 51
effective length of query: 37
effective length of database: 158,583,909
effective search space: 5867604633
effective search space used: 5867604633
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 158 (66.0 bits)