BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3187 (PAB3187) DE:Hypothetical protein
         (75 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75121 hypothetical protein PAB3187 - Pyrococcus abyssi (st...   151  7e-37
pir||F71080 hypothetical protein PHS027 - Pyrococcus horikoshii ...   104  9e-23
gi|11499936 A. fulgidus predicted coding region AF2359 [Archaeog...    77  2e-14
gb|AAK43179.1| Conserved hypothetical protein [Sulfolobus solfat...    75  7e-14
pir||B75199 hypothetical protein PAB3032 - Pyrococcus abyssi (st...    69  7e-12
gb|AAK41870.1| Conserved hypothetical protein [Sulfolobus solfat...    65  8e-11

>pir||C75121 hypothetical protein PAB3187 - Pyrococcus abyssi (strain Orsay)
          >gi|5458195|emb|CAB49684.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 75
          
 Score =  151 bits (378), Expect = 7e-37
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE 60
          MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE
Sbjct: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE 60

Query: 61 DIERIIEEGMRECMQ 75
          DIERIIEEGMRECMQ
Sbjct: 61 DIERIIEEGMRECMQ 75


>pir||F71080 hypothetical protein PHS027 - Pyrococcus horikoshii
          >gi|3257321|dbj|BAA30004.1| (AP000004) 74aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 74
          
 Score =  104 bits (258), Expect = 9e-23
 Identities = 45/74 (60%), Positives = 64/74 (85%)

Query: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE 60
          MPITKVTRNY++T+PAE+RK LGI+EG+ LEV++   +I++ +L+K R+TLKLG+ LTPE
Sbjct: 1  MPITKVTRNYRITIPAEIRKALGIKEGELLEVKLEDGKIIIERLKKERKTLKLGKKLTPE 60

Query: 61 DIERIIEEGMRECM 74
          +IE+ I EGM+EC+
Sbjct: 61 EIEKAIVEGMKECI 74


>gi|11499936 A. fulgidus predicted coding region AF2359 [Archaeoglobus
          fulgidus] >gi|7483816|pir||G69544 hypothetical protein
          AF2359 - Archaeoglobus fulgidus
          >gi|2650743|gb|AAB91311.1| (AE001113) A. fulgidus
          predicted coding region AF2359 [Archaeoglobus fulgidus]
          Length = 75
          
 Score = 77.3 bits (187), Expect = 2e-14
 Identities = 38/68 (55%), Positives = 51/68 (74%), Gaps = 2/68 (2%)

Query: 5  KVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGD--EIVMRKLRKNRRTLKLGRNLTPEDI 62
          KVTRN+Q+T+PAEVR+ +G++ GD LEVE   +  E ++RKL   RR LK GR LTP++I
Sbjct: 4  KVTRNFQITIPAEVRRKMGLKLGDVLEVEYNEEKGEAIIRKLGGERRKLKAGRKLTPDEI 63

Query: 63 ERIIEEGM 70
          E +I EGM
Sbjct: 64 EALIAEGM 71


>gb|AAK43179.1| Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 73
          
 Score = 75.3 bits (182), Expect = 7e-14
 Identities = 36/69 (52%), Positives = 47/69 (67%)

Query: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE 60
          M   KVTRNYQ+T+PA  R  + I+EGD LEV + GDEIV+RK++  R  ++LG  L+  
Sbjct: 1  MERVKVTRNYQITIPASARSKINIKEGDILEVYLNGDEIVLRKVKTERPRIRLGSKLSLG 60

Query: 61 DIERIIEEG 69
          DIE  IE G
Sbjct: 61 DIEEAIERG 69


>pir||B75199 hypothetical protein PAB3032 - Pyrococcus abyssi (strain Orsay)
          >gi|5457550|emb|CAB49041.1| (AJ248283) hypothetical
          protein [Pyrococcus abyssi]
          Length = 74
          
 Score = 68.7 bits (165), Expect = 7e-12
 Identities = 36/72 (50%), Positives = 46/72 (63%)

Query: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLKLGRNLTPE 60
          M ITKVTRNYQ+T+P++VRK LGI+ GD L +E+   + V++K       L  GR L  E
Sbjct: 1  MGITKVTRNYQITIPSDVRKKLGIKVGDVLIIEIEDGKAVIKKSDLELPLLPGGRGLKVE 60

Query: 61 DIERIIEEGMRE 72
          DIE  I  G RE
Sbjct: 61 DIEDAIRRGQRE 72


>gb|AAK41870.1| Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 79
          
 Score = 65.2 bits (156), Expect = 8e-11
 Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 1  MPITKVTRNYQVTLPAEVRKVLGIREGDFLEVEVRGDEIVMRKLRKNRRTLK--LGRNLT 58
          M   KVTRNYQ+T+P E+R+ LGI+ GD L V V GD+IV+ K + N  +L   LG+ +T
Sbjct: 1  MEEVKVTRNYQITIPYEIRQKLGIKIGDKLIVTVDGDKIVIEKKKGNISSLNLTLGKKIT 60

Query: 59 PEDIERIIEEGMRE 72
           E+I   I E  RE
Sbjct: 61 DEEINETINEAGRE 74


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.141    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25139536
Number of Sequences: 2977
Number of extensions: 818652
Number of successful extensions: 2611
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 6
length of query: 75
length of database: 189,106,746
effective HSP length: 54
effective length of query: 21
effective length of database: 156,788,448
effective search space: 3292557408
effective search space used: 3292557408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 156 (65.2 bits)