BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3293 (PAB3293) DE:Hypothetical protein
         (72 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75099 hypothetical protein PAB3293 - Pyrococcus abyssi (st...   142  5e-34

>pir||A75099 hypothetical protein PAB3293 - Pyrococcus abyssi (strain Orsay)
          >gi|5458606|emb|CAB50094.1| (AJ248286) hypothetical
          protein [Pyrococcus abyssi]
          Length = 72
          
 Score =  142 bits (354), Expect = 5e-34
 Identities = 71/72 (98%), Positives = 72/72 (99%)

Query: 1  LRKLGLNDRQIKAVLYVREKGRISNKEYQGLFGVSKPTASRELDSLVRKGILERVGVTRR 60
          +RKLGLNDRQIKAVLYVREKGRISNKEYQGLFGVSKPTASRELDSLVRKGILERVGVTRR
Sbjct: 1  MRKLGLNDRQIKAVLYVREKGRISNKEYQGLFGVSKPTASRELDSLVRKGILERVGVTRR 60

Query: 61 GTYYVLKGSNVS 72
          GTYYVLKGSNVS
Sbjct: 61 GTYYVLKGSNVS 72


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.138    0.372 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23163453
Number of Sequences: 2977
Number of extensions: 705638
Number of successful extensions: 1870
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1869
Number of HSP's gapped (non-prelim): 1
length of query: 72
length of database: 189,106,746
effective HSP length: 51
effective length of query: 21
effective length of database: 158,583,909
effective search space: 3330262089
effective search space used: 3330262089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)