BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3298 (PAB3298) DE:Hypothetical protein
         (61 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75100 hypothetical protein PAB3298 - Pyrococcus abyssi (st...   120  2e-27
gi|11498687 conserved hypothetical protein [Archaeoglobus fulgid...    65  8e-11

>pir||H75100 hypothetical protein PAB3298 - Pyrococcus abyssi (strain Orsay)
          >gi|5458621|emb|CAB50109.1| (AJ248286) hypothetical
          protein [Pyrococcus abyssi]
          Length = 61
          
 Score =  120 bits (298), Expect = 2e-27
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MEVIEVVYEDGVFKPLKKIKLKEGTRGVVVVRLPKQISEIAKKYRIKVREDVLEEFLEER 60
          MEVIEVVYEDGVFKPLKKIKLKEGTRGVVVVRLPKQISEIAKKYRIKVREDVLEEFLEER
Sbjct: 1  MEVIEVVYEDGVFKPLKKIKLKEGTRGVVVVRLPKQISEIAKKYRIKVREDVLEEFLEER 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>gi|11498687 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|7483088|pir||F69385 conserved hypothetical protein
          AF1087 - Archaeoglobus fulgidus
          >gi|2649503|gb|AAB90159.1| (AE001028) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 65
          
 Score = 65.2 bits (156), Expect = 8e-11
 Identities = 31/60 (51%), Positives = 47/60 (77%), Gaps = 2/60 (3%)

Query: 2  EVIEVVYEDGVFKPLKKIKLKEGTRGVVVVRLPKQISEIAKKYRIKVREDVLEEFLEERR 61
          ++IE VYE+GVFKPL+K+ LKEG +  + +R+ + I+++ K++  KV +DVLEEFL ERR
Sbjct: 8  KIIEAVYENGVFKPLQKVDLKEGEK--IRLRIEEGIADVIKEFSRKVDQDVLEEFLRERR 65


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.142    0.371 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19335690
Number of Sequences: 2977
Number of extensions: 573238
Number of successful extensions: 1955
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 189,106,746
effective HSP length: 40
effective length of query: 21
effective length of database: 165,167,266
effective search space: 3468512586
effective search space used: 3468512586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 156 (65.2 bits)