BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3319 (PAB3319) DE:Hypothetical protein
         (95 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75036 hypothetical protein PAB3319 - Pyrococcus abyssi (st...   200  4e-51
pir||C71127 hypothetical protein PHS025 - Pyrococcus horikoshii ...   148  1e-35
gi|11498426 A. fulgidus predicted coding region AF0820 [Archaeog...   132  1e-30
gb|AAK43311.1| Conserved hypothetical protein [Sulfolobus solfat...    97  6e-20
gi|11498268 conserved hypothetical protein [Archaeoglobus fulgid...    68  2e-11

>pir||D75036 hypothetical protein PAB3319 - Pyrococcus abyssi (strain Orsay)
          >gi|5458698|emb|CAB50185.1| (AJ248287) hypothetical
          protein [Pyrococcus abyssi]
          Length = 95
          
 Score =  200 bits (503), Expect = 4e-51
 Identities = 94/95 (98%), Positives = 95/95 (99%)

Query: 1  VRISEFQQMIREIYYHKDKKRGVEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWL 60
          +RISEFQQMIREIYYHKDKKRGVEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWL
Sbjct: 1  MRISEFQQMIREIYYHKDKKRGVEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWL 60

Query: 61 ASLANLLDIDLEEAAKKKYPGVCPYCGKKPCECEE 95
          ASLANLLDIDLEEAAKKKYPGVCPYCGKKPCECEE
Sbjct: 61 ASLANLLDIDLEEAAKKKYPGVCPYCGKKPCECEE 95


>pir||C71127 hypothetical protein PHS025 - Pyrococcus horikoshii
          >gi|3257194|dbj|BAA29877.1| (AP000003) 74aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 74
          
 Score =  148 bits (370), Expect = 1e-35
 Identities = 66/73 (90%), Positives = 72/73 (98%)

Query: 23 VEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWLASLANLLDIDLEEAAKKKYPGV 82
          +E+TFFWF+EEVGELAEALRK DRE++EEEFADVLAWLASLANL+DIDLEEAAKKKYPGV
Sbjct: 1  MERTFFWFIEEVGELAEALRKGDRESMEEEFADVLAWLASLANLVDIDLEEAAKKKYPGV 60

Query: 83 CPYCGKKPCECEE 95
          CPYCGKKPCECEE
Sbjct: 61 CPYCGKKPCECEE 73


>gi|11498426 A. fulgidus predicted coding region AF0820 [Archaeoglobus
          fulgidus] >gi|7451337|pir||D69352 hypothetical protein
          AF0820 - Archaeoglobus fulgidus
          >gi|2649790|gb|AAB90424.1| (AE001047) A. fulgidus
          predicted coding region AF0820 [Archaeoglobus fulgidus]
          Length = 94
          
 Score =  132 bits (328), Expect = 1e-30
 Identities = 62/94 (65%), Positives = 75/94 (78%), Gaps = 2/94 (2%)

Query: 1  VRISEFQQMIREIYYHKDKKRGVEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWL 60
          ++ISEFQ+MI EIY ++D++RGVEKT  W VEEVGELAEA+RK     + EE ADV+AWL
Sbjct: 1  MKISEFQRMISEIYINRDRERGVEKTMLWVVEEVGELAEAVRKGTN--VGEEIADVMAWL 58

Query: 61 ASLANLLDIDLEEAAKKKYPGVCPYCGKKPCECE 94
           SLANLLD+D+EE   KKYPG C  CGKKPCEC+
Sbjct: 59 VSLANLLDVDVEEEILKKYPGYCIRCGKKPCECD 92


>gb|AAK43311.1| Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 83
          
 Score = 96.7 bits (237), Expect = 6e-20
 Identities = 43/79 (54%), Positives = 59/79 (74%)

Query: 1  VRISEFQQMIREIYYHKDKKRGVEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWL 60
          + + E Q  ++E+Y+ KD +RG+  TF W VEEVGELAEAL  N+ ++++EE ADV+AW 
Sbjct: 3  LELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLSNNLDSIQEELADVIAWT 62

Query: 61 ASLANLLDIDLEEAAKKKY 79
           S+ANL  ID+EEA KKKY
Sbjct: 63 VSIANLEGIDIEEALKKKY 81


>gi|11498268 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|7451336|pir||D69332 conserved hypothetical protein
          AF0660 - Archaeoglobus fulgidus
          >gi|2649959|gb|AAB90581.1| (AE001059) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 91
          
 Score = 68.3 bits (164), Expect = 2e-11
 Identities = 37/79 (46%), Positives = 50/79 (62%), Gaps = 2/79 (2%)

Query: 1  VRISEFQQMIREIYYHKDKKRGVEKTFFWFVEEVGELAEALRKNDREALEEEFADVLAWL 60
          + + +FQ++ RE YY  D + G         EEVGELAEA+RKN  + +EEE ADVL  +
Sbjct: 1  MELKDFQKIFREKYYETDSRSGPLFLLAVLFEEVGELAEAVRKN--QNVEEELADVLFMV 58

Query: 61 ASLANLLDIDLEEAAKKKY 79
           S+ANL D+DLE    +KY
Sbjct: 59 ISIANLYDVDLERKLIEKY 77


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.418 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35728226
Number of Sequences: 2977
Number of extensions: 1246834
Number of successful extensions: 9178
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9172
Number of HSP's gapped (non-prelim): 5
length of query: 95
length of database: 189,106,746
effective HSP length: 49
effective length of query: 46
effective length of database: 159,780,883
effective search space: 7349920618
effective search space used: 7349920618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)