BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3329 (PAB3329) DE:Hypothetical protein
         (97 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75040 hypothetical protein PAB3329 - Pyrococcus abyssi (st...   198  1e-50
gb|AAK42336.1| Conserved hypothetical protein [Sulfolobus solfat...    71  3e-12
pir||S74067 hypothetical protein c0136 - Sulfolobus solfataricus...    71  3e-12
gb|AAG18946.1| (AE004996) Vng0389c [Halobacterium sp. NRC-1]           67  5e-11

>pir||A75040 hypothetical protein PAB3329 - Pyrococcus abyssi (strain Orsay)
          >gi|5458727|emb|CAB50214.1| (AJ248287) hypothetical
          protein [Pyrococcus abyssi]
          Length = 97
          
 Score =  198 bits (499), Expect = 1e-50
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MPSRREKIIELLLERDYSPSELARILEIKGKGAKKVILEDLKVIAKIAKREGMVLLVKPA 60
          MPSRREKIIELLLERDYSPSELARILEIKGKGAKKVILEDLKVIAKIAKREGMVLLVKPA
Sbjct: 1  MPSRREKIIELLLERDYSPSELARILEIKGKGAKKVILEDLKVIAKIAKREGMVLLVKPA 60

Query: 61 QCRKCGFTFRPEINIPSRCPRCKSEWIEEPRFKLERK 97
          QCRKCGFTFRPEINIPSRCPRCKSEWIEEPRFKLERK
Sbjct: 61 QCRKCGFTFRPEINIPSRCPRCKSEWIEEPRFKLERK 97


>gb|AAK42336.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 101
           
 Score = 71.0 bits (171), Expect = 3e-12
 Identities = 39/96 (40%), Positives = 60/96 (61%), Gaps = 6/96 (6%)

Query: 5   REKIIELLLERD--YSPSELARILEIKGKGAKKVILEDLKVIAKIAKREGMVLLVKPAQC 62
           REKI  LL   D   S  E+ R L+++    +K + + L+ +A+ +KR+G +L++ PA+C
Sbjct: 9   REKIFLLLFYSDEPLSAREIMRRLDVR---KEKEVYDHLEHLARSSKRKGYMLIIIPAKC 65

Query: 63  RKCGFTFRPE-INIPSRCPRCKSEWIEEPRFKLERK 97
           + CG+ F  + I  PSRCP CKSE IE P+F +  K
Sbjct: 66  KSCGYVFNSDKIKKPSRCPICKSEKIEMPKFLIRNK 101


>pir||S74067 hypothetical protein c0136 - Sulfolobus solfataricus
           >gi|1707766|emb|CAA69438.1| (Y08256) orf c01036
           [Sulfolobus solfataricus]
           Length = 101
           
 Score = 71.0 bits (171), Expect = 3e-12
 Identities = 39/96 (40%), Positives = 60/96 (61%), Gaps = 6/96 (6%)

Query: 5   REKIIELLLERD--YSPSELARILEIKGKGAKKVILEDLKVIAKIAKREGMVLLVKPAQC 62
           REKI  LL   D   S  E+ R L+++    +K + + L+ +A+ +KR+G +L++ PA+C
Sbjct: 9   REKIFLLLFYSDEPLSAREIMRRLDVR---KEKEVYDHLEHLARSSKRKGYMLIIIPAKC 65

Query: 63  RKCGFTFRPE-INIPSRCPRCKSEWIEEPRFKLERK 97
           + CG+ F  + I  PSRCP CKSE IE P+F +  K
Sbjct: 66  KSCGYVFNSDKIKKPSRCPICKSEKIEMPKFLIRNK 101


>gb|AAG18946.1| (AE004996) Vng0389c [Halobacterium sp. NRC-1]
          Length = 96
          
 Score = 67.1 bits (161), Expect = 5e-11
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 5  REKIIELLLERDYSPSELARILEIKGKGAKKVILEDLKVIAKIAKREGMVLLVKPAQCRK 64
          RE++   L E+  +PSE+A   E+    A+   L  ++ IA+        LLV+P  CR 
Sbjct: 7  RERVRAALREQPATPSEVAAAFEV----ARGTALTHVRHIAESLDSADEELLVRPPACRD 62

Query: 65 CGFT-FRPEINIPSRCPRCKSEWIEEPRFKLE 95
          CGF  F   +N+PSRCP CKSE I EP F +E
Sbjct: 63 CGFEDFDDPVNVPSRCPECKSESIAEPAFVVE 94


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36176325
Number of Sequences: 2977
Number of extensions: 1270810
Number of successful extensions: 4815
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4810
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 189,106,746
effective HSP length: 50
effective length of query: 47
effective length of database: 159,182,396
effective search space: 7481572612
effective search space used: 7481572612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)