BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3384 (rpl39E) DE:LSU ribosomal protein L39E (rpl39E)
         (51 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75066 lsu ribosomal protein l39e (rpl39e) PAB3384 - Pyroco...   108  8e-24
sp|O27650|RL39_METTH 50S RIBOSOMAL PROTEIN L39E >gi|7440766|pir|...    83  3e-16
sp|P54056|RL39_METJA 50S RIBOSOMAL PROTEIN L39E >gi|2119127|pir|...    76  3e-14
gb|AAK40683.1| LSU ribosomal protein L39E (rpl39E) [Sulfolobus s...    69  8e-12
gi|11499649 LSU ribosomal protein L39E (rpl39E) [Archaeoglobus f...    68  2e-11
emb|CAC11201.1| (AL445063) probable 50S ribosomal protein L39 [T...    66  7e-11

>pir||C75066 lsu ribosomal protein l39e (rpl39e) PAB3384 - Pyrococcus abyssi
          (strain Orsay) >gi|5458937|emb|CAB50424.1| (AJ248287)
          LSU ribosomal protein L39E (rpl39E) [Pyrococcus abyssi]
          Length = 51
          
 Score =  108 bits (267), Expect = 8e-24
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLKE 51
          MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLKE
Sbjct: 1  MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLKE 51


>sp|O27650|RL39_METTH 50S RIBOSOMAL PROTEIN L39E >gi|7440766|pir||E69082 ribosomal
          protein L39 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2622738|gb|AAB86086.1| (AE000920)
          ribosomal protein L39 [Methanobacterium
          thermoautotrophicum]
          Length = 51
          
 Score = 83.1 bits (202), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1  MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLK 50
          M+RNK +A+KLR+AKA +QNRRVP WV+VKTN RV +HPK RHWRRTKLK
Sbjct: 1  MSRNKHVARKLRMAKANRQNRRVPAWVMVKTNYRVRSHPKMRHWRRTKLK 50


>sp|P54056|RL39_METJA 50S RIBOSOMAL PROTEIN L39E >gi|2119127|pir||A64386 ribosomal
          protein L46 - Methanococcus jannaschii
          >gi|1591404|gb|AAB98684.1| (U67516) LSU ribosomal
          protein L39E  [Methanococcus jannaschii]
          Length = 52
          
 Score = 76.5 bits (185), Expect = 3e-14
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 1  MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLK 50
          M  NKPL KK+RLAKA+KQNRRVP++VIVKT  RV  HPK R+WRR KLK
Sbjct: 2  MGSNKPLGKKVRLAKALKQNRRVPLFVIVKTRGRVRFHPKMRYWRRKKLK 51


>gb|AAK40683.1| LSU ribosomal protein L39E (rpl39E) [Sulfolobus solfataricus]
          Length = 53
          
 Score = 68.7 bits (165), Expect = 8e-12
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query: 1  MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLK 50
          M+RNKP+AKK RLAKA+K N  +P+W+++KT  RV  +P RR+WRR  LK
Sbjct: 3  MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLK 52


>gi|11499649 LSU ribosomal protein L39E (rpl39E) [Archaeoglobus fulgidus]
          >gi|3122732|sp|O28212|RL39_ARCFU 50S RIBOSOMAL PROTEIN
          L39E >gi|7440767|pir||B69508 LSU ribosomal protein L39E
          (rpl39E) homolog - Archaeoglobus fulgidus
          >gi|2648484|gb|AAB89208.1| (AE000961) LSU ribosomal
          protein L39E (rpl39E) [Archaeoglobus fulgidus]
          Length = 50
          
 Score = 67.5 bits (162), Expect = 2e-11
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 5  KPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLK 50
          K +  K RLAKA KQNRR PVW+ VKT R V   PKRRHWRR+KLK
Sbjct: 4  KTVGVKKRLAKAYKQNRRAPVWITVKTKRSVFGSPKRRHWRRSKLK 49


>emb|CAC11201.1| (AL445063) probable 50S ribosomal protein L39 [Thermoplasma
          acidophilum]
          Length = 51
          
 Score = 65.6 bits (157), Expect = 7e-11
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query: 1  MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLK 50
          M+RNK L +K+RL K +KQNRRVP WV+++T R+V  +P RR+WRR  LK
Sbjct: 1  MSRNKELGRKIRLMKKIKQNRRVPGWVMMRTARKVTQNPLRRNWRRGSLK 50


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.132    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16889480
Number of Sequences: 2977
Number of extensions: 398914
Number of successful extensions: 1026
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 6
length of query: 51
length of database: 189,106,746
effective HSP length: 30
effective length of query: 21
effective length of database: 171,152,136
effective search space: 3594194856
effective search space used: 3594194856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 156 (65.2 bits)