BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3393 (PAB3393) DE:Hypothetical protein
         (62 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75004 hypothetical protein PAB3393 - Pyrococcus abyssi (st...   122  4e-28
pir||B71158 probable nusA protein - Pyrococcus horikoshii >gi|32...   112  4e-25

>pir||G75004 hypothetical protein PAB3393 - Pyrococcus abyssi (strain Orsay)
          >gi|5458991|emb|CAB50477.1| (AJ248288) hypothetical
          protein [Pyrococcus abyssi]
          Length = 62
          
 Score =  122 bits (304), Expect = 4e-28
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MDDVYRRLKEMLRVEIIDLEFQEDKIIVYVPKDQVRLAVGYGGAVVKSAELVLGKKIEIR 60
          MDDVYRRLKEMLRVEIIDLEFQEDKIIVYVPKDQVRLAVGYGGAVVKSAELVLGKKIEIR
Sbjct: 1  MDDVYRRLKEMLRVEIIDLEFQEDKIIVYVPKDQVRLAVGYGGAVVKSAELVLGKKIEIR 60

Query: 61 GR 62
          GR
Sbjct: 61 GR 62


>pir||B71158 probable nusA protein - Pyrococcus horikoshii
          >gi|3256868|dbj|BAA29551.1| (AP000002) 65aa long
          hypothetical nusA protein [Pyrococcus horikoshii]
          Length = 65
          
 Score =  112 bits (278), Expect = 4e-25
 Identities = 53/62 (85%), Positives = 61/62 (97%)

Query: 1  MDDVYRRLKEMLRVEIIDLEFQEDKIIVYVPKDQVRLAVGYGGAVVKSAELVLGKKIEIR 60
          MD++Y RLKEMLRVEI+D+EF++DKIIVYVPKD+VRLAVGYGGAVVKSAELVLGKKIE+R
Sbjct: 4  MDEIYSRLKEMLRVEILDIEFKDDKIIVYVPKDEVRLAVGYGGAVVKSAELVLGKKIEVR 63

Query: 61 GR 62
          GR
Sbjct: 64 GR 65


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.146    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19775098
Number of Sequences: 2977
Number of extensions: 581069
Number of successful extensions: 1428
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 2
length of query: 62
length of database: 189,106,746
effective HSP length: 41
effective length of query: 21
effective length of database: 164,568,779
effective search space: 3455944359
effective search space used: 3455944359
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)