BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3419 (rps24E) DE:SSU ribosomal protein S24E (rps24E)
         (99 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75019 ssu ribosomal protein s24e (rps24e) PAB3419 - Pyroco...   206  6e-53
sp|O26367|RS24_METTH 30S RIBOSOMAL PROTEIN S24E >gi|7440533|pir|...    83  7e-16
gi|11498714 SSU ribosomal protein S24E (rps24E) [Archaeoglobus f...    71  4e-12
sp|P54032|RS24_METJA 30S RIBOSOMAL PROTEIN S24E >gi|2129265|pir|...    70  5e-12

>pir||B75019 ssu ribosomal protein s24e (rps24e) PAB3419 - Pyrococcus abyssi
          (strain Orsay) >gi|5459106|emb|CAB50592.1| (AJ248288)
          SSU ribosomal protein S24E (rps24E) [Pyrococcus abyssi]
          Length = 99
          
 Score =  206 bits (518), Expect = 6e-53
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
          MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF
Sbjct: 1  MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60

Query: 61 GSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKEGE 99
          GSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKEGE
Sbjct: 61 GSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKEGE 99


>sp|O26367|RS24_METTH 30S RIBOSOMAL PROTEIN S24E >gi|7440533|pir||F69133 ribosomal
          protein S24 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621317|gb|AAB84773.1| (AE000812)
          ribosomal protein S24 [Methanobacterium
          thermoautotrophicum]
          Length = 100
          
 Score = 83.1 bits (202), Expect = 7e-16
 Identities = 43/99 (43%), Positives = 61/99 (61%)

Query: 1  MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
          MEI I E KEN L+ RKEI FE  + GE TP   +VK KLVAMLD + +  V+  I   F
Sbjct: 1  MEINIIEEKENPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDADKDLLVVDKIDQGF 60

Query: 61 GSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKEGE 99
          G  ++ GYAK Y   +++  IEPE+++ ++    ++E E
Sbjct: 61 GEPRATGYAKIYESAEKLTEIEPEHVIKKNTEASEEEEE 99


>gi|11498714 SSU ribosomal protein S24E (rps24E) [Archaeoglobus fulgidus]
          >gi|6647784|sp|O29151|RS24_ARCFU 30S RIBOSOMAL PROTEIN
          S24E >gi|7440532|pir||A69389 SSU ribosomal protein S24E
          (rps24E) homolog - Archaeoglobus fulgidus
          >gi|2649474|gb|AAB90128.1| (AE001027) SSU ribosomal
          protein S24E (rps24E) [Archaeoglobus fulgidus]
          Length = 110
          
 Score = 70.6 bits (170), Expect = 4e-12
 Identities = 33/97 (34%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 1  MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
          +E+ + + + N L+ R+E+Y  +   G+ TPSRK+V+GK+  +++  PE  V+ YI++ F
Sbjct: 4  LEVYVEKERHNPLLRRREVYCRLSFEGK-TPSRKEVRGKIAGLMNAEPERVVVDYIKTEF 62

Query: 61 GSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKE 97
          G  ++K Y K Y   + +  IE E+I+ R+ + E+ E
Sbjct: 63 GKTEAKCYVKIYDTVEDLQKIEEEHIIERNKVEEQAE 99


>sp|P54032|RS24_METJA 30S RIBOSOMAL PROTEIN S24E >gi|2129265|pir||B64349 ribosomal
          protein S24 - Methanococcus jannaschii
          >gi|1591099|gb|AAB98384.1| (U67492) SSU ribosomal
          protein S24E [Methanococcus jannaschii]
          Length = 101
          
 Score = 70.2 bits (169), Expect = 5e-12
 Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 1  MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
          MEIKI   + N L+ RKE  F + H G PTP+ KDVK KL A+L+ N +  +++ I    
Sbjct: 1  MEIKILSERYNPLLKRKEYRFIVDHDG-PTPTFKDVKLKLAAILNANKDLLIVEKIVEEA 59

Query: 61 GSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKEGE 99
          G  +++GYAK Y +++ +  +E E+IL ++ I E+   E
Sbjct: 60 GMQRARGYAKLYDNEEMLKLVEREHILRKNKIEEETAAE 98


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.141    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41433614
Number of Sequences: 2977
Number of extensions: 1677164
Number of successful extensions: 2899
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2896
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 189,106,746
effective HSP length: 52
effective length of query: 47
effective length of database: 157,985,422
effective search space: 7425314834
effective search space used: 7425314834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 159 (66.3 bits)