BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3433 (PAB3433) DE:Hypothetical protein
         (80 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75026 hypothetical protein PAB3433 - Pyrococcus abyssi (st...   168  8e-42
sp|Q58988|YF93_METJA HYPOTHETICAL PROTEIN MJ1593 >gi|2128066|pir...    75  2e-13
sp|O26271|Y169_METTH HYPOTHETICAL PROTEIN MTH169 >gi|7447495|pir...    67  4e-11

>pir||C75026 hypothetical protein PAB3433 - Pyrococcus abyssi (strain Orsay)
          >gi|5459163|emb|CAB50649.1| (AJ248288) hypothetical
          protein [Pyrococcus abyssi]
          Length = 80
          
 Score =  168 bits (422), Expect = 8e-42
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MRWKVRVLVRLKEGLNDPEGRVIGKALKNLGYKVEELKVPKCFEFVLESEKPEEEVEEMC 60
          MRWKVRVLVRLKEGLNDPEGRVIGKALKNLGYKVEELKVPKCFEFVLESEKPEEEVEEMC
Sbjct: 1  MRWKVRVLVRLKEGLNDPEGRVIGKALKNLGYKVEELKVPKCFEFVLESEKPEEEVEEMC 60

Query: 61 RRLLANPLIHTWEYTIEPVK 80
          RRLLANPLIHTWEYTIEPVK
Sbjct: 61 RRLLANPLIHTWEYTIEPVK 80


>sp|Q58988|YF93_METJA HYPOTHETICAL PROTEIN MJ1593 >gi|2128066|pir||H64498 hypothetical
          protein homolog MJ1593 - Methanococcus jannaschii
          >gi|1500489|gb|AAB99611.1| (U67599) conserved
          hypothetical protein [Methanococcus jannaschii]
          Length = 83
          
 Score = 74.5 bits (180), Expect = 2e-13
 Identities = 36/82 (43%), Positives = 58/82 (69%), Gaps = 4/82 (4%)

Query: 3  WKVRVLVRLKEGLNDPEGRVIGKALKNLGYK-VEELKVPKCFEFVLESEKPE---EEVEE 58
          +K  V+++LK+G+ +PEGR I +AL  LG+  V+E++  K  + ++E E  E   EEVEE
Sbjct: 2  YKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVEE 61

Query: 59 MCRRLLANPLIHTWEYTIEPVK 80
          MC++LLANP+IH +E  +E ++
Sbjct: 62 MCKKLLANPVIHDYEIKVEKIE 83


>sp|O26271|Y169_METTH HYPOTHETICAL PROTEIN MTH169 >gi|7447495|pir||H69092 conserved
          hypothetical protein MTH169 - Methanobacterium
          thermoautotrophicum (strain Delta H)
          >gi|2621211|gb|AAB84675.1| (AE000804) conserved protein
          [Methanobacterium thermoautotrophicum]
          Length = 84
          
 Score = 66.7 bits (160), Expect = 4e-11
 Identities = 33/83 (39%), Positives = 52/83 (61%), Gaps = 3/83 (3%)

Query: 1  MRWKVRVLVRLKEGLNDPEGRVIGKALKNLGYKVEELKVPKCFEFVLES---EKPEEEVE 57
          M++ V V +RLK+G+ +PE   I +AL  LGY+VE+        F ++    E  E EVE
Sbjct: 1  MKFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTDVITFTMDEDSLEAVEREVE 60

Query: 58 EMCRRLLANPLIHTWEYTIEPVK 80
          +MC+RLL NP+IH ++ +I  ++
Sbjct: 61 DMCQRLLCNPVIHDYDVSINEME 83


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32489125
Number of Sequences: 2977
Number of extensions: 1149834
Number of successful extensions: 3108
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3105
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 189,106,746
effective HSP length: 48
effective length of query: 32
effective length of database: 160,379,370
effective search space: 5132139840
effective search space used: 5132139840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 157 (65.6 bits)