BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7080 (rps14P) DE:SSU ribosomal protein S14P (rps14P)
         (56 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O74093|RS14_PYRHO 30S RIBOSOMAL PROTEIN S14P >gi|7440408|pir|...   126  3e-29
sp|O26125|RS14_METTH 30S RIBOSOMAL PROTEIN S14P >gi|7440410|pir|...    74  2e-13
sp|P14041|RS14_METVA 30S RIBOSOMAL PROTEIN S14P >gi|70979|pir||R...    66  5e-11

>sp|O74093|RS14_PYRHO 30S RIBOSOMAL PROTEIN S14P >gi|7440408|pir||H71185 probable
          ribosomal protein S14 - Pyrococcus horikoshii
          >gi|7521697|pir||B75146 ssu ribosomal protein s14p
          (rps14p) PAB7080 - Pyrococcus abyssi (strain Orsay)
          >gi|3258196|dbj|BAA30879.1| (AP000007) 56aa long
          hypothetical 30S ribosomal protein S14 [Pyrococcus
          horikoshii] >gi|5457759|emb|CAB49249.1| (AJ248284) SSU
          ribosomal protein S14P (rps14P) [Pyrococcus abyssi]
          Length = 56
          
 Score =  126 bits (313), Expect = 3e-29
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE 56
          MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE
Sbjct: 1  MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE 56


>sp|O26125|RS14_METTH 30S RIBOSOMAL PROTEIN S14P >gi|7440410|pir||C69094 ribosomal
          protein S14 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621045|gb|AAB84518.1| (AE000795)
          ribosomal protein S29 (E.coli S14) [Methanobacterium
          thermoautotrophicum]
          Length = 50
          
 Score = 74.1 bits (179), Expect = 2e-13
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 11 PRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKY 55
          PRK+GK +R+C RCG +  ++R +GLMLCR CFRE+APK+GF+KY
Sbjct: 5  PRKYGKASRKCSRCGDHSALVRRYGLMLCRQCFRELAPKIGFKKY 49


>sp|P14041|RS14_METVA 30S RIBOSOMAL PROTEIN S14P >gi|70979|pir||R3MX14 ribosomal
          protein S14 - Methanococcus vannielii
          >gi|44762|emb|CAA34694.1| (X16720) rpS14 (AA 1-53)
          [Methanococcus vannielii]
          Length = 53
          
 Score = 66.0 bits (158), Expect = 5e-11
 Identities = 29/45 (64%), Positives = 38/45 (84%), Gaps = 1/45 (2%)

Query: 13 KFGKGARRCIRCGQYGP-IIRIHGLMLCRHCFREVAPKLGFRKYE 56
          K+G+G++ C RCG+ GP IIR +GL LCR CFRE+APKLGF+KY+
Sbjct: 9  KYGQGSKVCKRCGRKGPGIIRKYGLDLCRQCFRELAPKLGFKKYD 53


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.333    0.149    0.504 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22270647
Number of Sequences: 2977
Number of extensions: 662856
Number of successful extensions: 1573
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1570
Number of HSP's gapped (non-prelim): 3
length of query: 56
length of database: 189,106,746
effective HSP length: 35
effective length of query: 21
effective length of database: 168,159,701
effective search space: 3531353721
effective search space used: 3531353721
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 156 (65.2 bits)