BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7082 (suI1-like) DE:PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG.
(99 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75147 protein translation factor sui1 homolog. PAB7082 - P... 196 7e-50
sp|O26118|SUI1_METTH PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG >gi... 111 2e-24
pir||H72542 hypothetical protein APE1629 - Aeropyrum pernix (str... 102 9e-22
sp|Q57902|SUI1_METJA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG >gi... 102 1e-21
gi|11498519 conserved hypothetical protein [Archaeoglobus fulgid... 101 2e-21
sp|P14021|SUI1_METVA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG >gi... 98 2e-20
gb|AAG20628.1| (AE005132) Vng2584c [Halobacterium sp. NRC-1] 82 1e-15
>pir||A75147 protein translation factor sui1 homolog. PAB7082 - Pyrococcus
abyssi (strain Orsay) >gi|5457766|emb|CAB49256.1|
(AJ248284) PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG.
[Pyrococcus abyssi]
Length = 99
Score = 196 bits (492), Expect = 7e-50
Identities = 98/99 (98%), Positives = 99/99 (99%)
Query: 1 LVPRIVNPLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAK 60
+VPRIVNPLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAK
Sbjct: 1 MVPRIVNPLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAK 60
Query: 61 LACGGTAKNGRIELQGDHRDRIKKLLAELGFSEDLIEVE 99
LACGGTAKNGRIELQGDHRDRIKKLLAELGFSEDLIEVE
Sbjct: 61 LACGGTAKNGRIELQGDHRDRIKKLLAELGFSEDLIEVE 99
>sp|O26118|SUI1_METTH PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG >gi|7444668|pir||B69000
ribosomal protein SUI1 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621038|gb|AAB84511.1| (AE000795) ribosomal protein
SUI1 [Methanobacterium thermoautotrophicum]
Length = 101
Score = 111 bits (275), Expect = 2e-24
Identities = 49/91 (53%), Positives = 72/91 (78%)
Query: 8 PLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA 67
P + + +E+ +E Q ++VYT R R+GK+ TIIEGIDE + D++E+ K LKA+ ACGGTA
Sbjct: 10 PEELCVCEEIAREVQTLKVYTVRRRFGKVMTIIEGIDEHDIDIKELTKILKARCACGGTA 69
Query: 68 KNGRIELQGDHRDRIKKLLAELGFSEDLIEV 98
K G+IELQGDH+ ++K++LA++GFS D IE+
Sbjct: 70 KKGQIELQGDHKKKVKEVLADMGFSSDTIEI 100
>pir||H72542 hypothetical protein APE1629 - Aeropyrum pernix (strain K1)
>gi|5105316|dbj|BAA80629.1| (AP000062) 101aa long
hypothetical protein translation factor SUI1 [Aeropyrum
pernix]
Length = 101
Score = 102 bits (252), Expect = 9e-22
Identities = 48/79 (60%), Positives = 65/79 (81%)
Query: 20 EQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTAKNGRIELQGDHR 79
E+Q I++ E+ R+G+ TIIEGI+EKEF+L+++A LK++LA GGTAKNGRIELQGDHR
Sbjct: 21 EEQIIKIRLEKRRFGREVTIIEGINEKEFNLKKLASTLKSRLATGGTAKNGRIELQGDHR 80
Query: 80 DRIKKLLAELGFSEDLIEV 98
R+KK+L ELGF E+ I +
Sbjct: 81 HRVKKILVELGFPEENITI 99
>sp|Q57902|SUI1_METJA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG >gi|2128010|pir||G64357
hypothetical protein homolog MJ0463 - Methanococcus
jannaschii >gi|1591165|gb|AAB98452.1| (U67497) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 103
Score = 102 bits (251), Expect = 1e-21
Identities = 47/98 (47%), Positives = 68/98 (68%)
Query: 1 LVPRIVNPLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAK 60
+ PR P + + +E+ KE+Q+I++Y + R+GK+ TIIEG D DL+E+AKKLK
Sbjct: 5 ICPRCGLPKELCVCEEIAKEEQKIKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDI 64
Query: 61 LACGGTAKNGRIELQGDHRDRIKKLLAELGFSEDLIEV 98
ACGGT K+ IELQGDHR ++ + L ++GFS D IE+
Sbjct: 65 CACGGTVKDNTIELQGDHRKKVAEELVKMGFSRDSIEI 102
>gi|11498519 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3122889|sp|O29348|SUI1_ARCFU PROTEIN TRANSLATION
FACTOR SUI1 HOMOLOG >gi|7444669|pir||B69364 conserved
hypothetical protein AF0914 - Archaeoglobus fulgidus
>gi|2649680|gb|AAB90322.1| (AE001040) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 101
Score = 101 bits (249), Expect = 2e-21
Identities = 52/90 (57%), Positives = 68/90 (74%)
Query: 8 PLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA 67
P D + +EV KEQQ I + T + RYGK TIIEGID+ E +LEE+AK LK+KLACGGT
Sbjct: 11 PKDLCVCEEVAKEQQFIVIKTGKRRYGKEVTIIEGIDKGEINLEELAKYLKSKLACGGTV 70
Query: 68 KNGRIELQGDHRDRIKKLLAELGFSEDLIE 97
KNG IELQG+H +R+K+LL + GF+ + I+
Sbjct: 71 KNGVIELQGNHVNRVKELLIKKGFNPERIK 100
>sp|P14021|SUI1_METVA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG >gi|80968|pir||S05611
hypothetical protein A - Methanococcus vannielii
>gi|44755|emb|CAA34687.1| (X16720) ORF a [Methanococcus
vannielii]
Length = 102
Score = 97.9 bits (240), Expect = 2e-20
Identities = 42/91 (46%), Positives = 67/91 (73%)
Query: 8 PLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA 67
P D + +E+ KE+Q+I+VY + R+GK+ T+++G D D++++AKKLK ACGGT
Sbjct: 11 PKDLCVCEEIAKEEQKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTV 70
Query: 68 KNGRIELQGDHRDRIKKLLAELGFSEDLIEV 98
K IELQGDHR + +++L ++GFS+D+I+V
Sbjct: 71 KKDSIELQGDHRKKAEEILIKMGFSKDMIDV 101
>gb|AAG20628.1| (AE005132) Vng2584c [Halobacterium sp. NRC-1]
Length = 97
Score = 82.3 bits (200), Expect = 1e-15
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 8 PLDEMLFKEVLKEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTA 67
P + + ++V KE Q+I + + RYGK T+IEG D K+ DL+ ++ LK+K ACGGT
Sbjct: 11 PEELCVCEDVAKESQQIEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTV 70
Query: 68 KNGRIELQGDHRDRIKKLLAELGFS 92
++G IELQG+H R++ L GF+
Sbjct: 71 EDGEIELQGNHSGRVEDFLRNKGFN 95
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34641029
Number of Sequences: 2977
Number of extensions: 1246563
Number of successful extensions: 4779
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4772
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 189,106,746
effective HSP length: 54
effective length of query: 45
effective length of database: 156,788,448
effective search space: 7055480160
effective search space used: 7055480160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)