BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7083 (rpl23P) DE:LSU ribosomal protein L23P (rpl23P)
(86 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75147 lsu ribosomal protein l23p (rpl23p) PAB7083 - Pyroco... 168 7e-42
sp|O74095|RL23_PYRHO 50S RIBOSOMAL PROTEIN L23P >gi|7441006|pir|... 163 3e-40
sp|P54016|RL23_METJA 50S RIBOSOMAL PROTEIN L23P >gi|2119141|pir|... 124 2e-28
sp|P10143|RL23_METVA 50S RIBOSOMAL PROTEIN L23P (ML7) >gi|71294|... 110 2e-24
sp|O26112|RL23_METTH 50S RIBOSOMAL PROTEIN L23P >gi|7428686|pir|... 109 6e-24
gi|11499507 LSU ribosomal protein L23P (rpl23P) [Archaeoglobus f... 100 2e-21
gb|AAK41016.1| LSU ribosomal protein L23AB (rpl23AB) [Sulfolobus... 99 9e-21
sp|Q9YFM0|RL23_AERPE 50S RIBOSOMAL PROTEIN L23P >gi|7521363|pir|... 96 8e-20
emb|CAA62040.1| (X90414) Chloroplast ribosomal protein L23 [Spin... 92 9e-19
sp|P41165|RL2B_TRYBB 60S RIBOSOMAL PROTEIN L23A (L25) >gi|439213... 90 5e-18
sp|P29316|RL2B_HUMAN 60S RIBOSOMAL PROTEIN L23A >gi|279654|pir||... 89 1e-17
gb|AAA35681.1| (L13799) homology to rat ribosomal protein L23 [H... 89 1e-17
gb|AAA03341.1| (U02032) ribosomal protein L23a [Homo sapiens] 89 1e-17
gb|AAG30009.1|AF281334_1 (AF281334) 60S ribosomal protein [Oncor... 88 1e-17
emb|CAC09501.1| (AL442115) putative 60s Ribosomal protein L25 [O... 88 2e-17
pir||T01654 ribosomal protein L23 - maize (fragment) >gi|3264605... 88 2e-17
gi|4506615 ribosomal protein L23a [Homo sapiens] >gi|1574942|gb|... 87 4e-17
sp|O22644|RL2B_FRIAG 60S RIBOSOMAL PROTEIN L23A >gi|2641201|gb|A... 87 4e-17
pir||T00556 ribosomal protein L23a, cytosolic - Arabidopsis thal... 86 7e-17
pir||T47667 ribosomal L23a-like protein - Arabidopsis thaliana >... 86 7e-17
emb|CAA63107.1| (X92350) ribosomal protein L23 [Spinacia oleracea] 85 9e-17
emb|CAC12393.1| (AL445067) probable 50S ribosomal protein L23 [T... 85 9e-17
emb|CAA63112.1| (X92367) ribosomal protein L23 [Spinacia oleracea] 85 1e-16
gb|AAB87692.1| (AF034694) ribosomal protein L23a [Arabidopsis th... 85 2e-16
sp|Q07761|RL2B_TOBAC 60S RIBOSOMAL PROTEIN L23A (L25) >gi|108442... 84 3e-16
sp|Q20647|RL2C_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L23A 2 >gi|7... 83 3e-16
pir||S41653 ribosomal protein L25, cytosolic - Trypanosoma brucei 82 8e-16
gi|6324445 Ribosomal protein L25 (rpl6L) (YL25); Rpl25p [Sacchar... 82 1e-15
sp|P48162|RL2B_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L23A 1 >gi|7... 82 1e-15
sp|P51997|RL2B_PUCGR 60S RIBOSOMAL PROTEIN L23A (L25) >gi|170787... 82 1e-15
gb|AAF37874.1|AF234162_1 (AF234162) ribosomal protein L25 [Leish... 81 2e-15
pir||S30000 ribosomal protein L23a.e - yeast (Kluyveromyces marx... 80 3e-15
gb|AAD19340.1| (AF080130) ribosomal protein L23a [Drosophila mel... 80 4e-15
gb|AAF47545.1| (AE003472) RpL23a gene product [Drosophila melano... 80 4e-15
gb|AAD22096.1| (AF128456) ribosomal protein L23A [Entamoeba hist... 80 5e-15
sp|P08792|RL25_PICJA 60S RIBOSOMAL PROTEIN L25 >gi|71310|pir||R5... 79 7e-15
sp|P48045|RL25_KLULA 60S RIBOSOMAL PROTEIN L25 >gi|320177|pir||S... 79 9e-15
sp|O74391|R25B_SCHPO 60S RIBOSOMAL PROTEIN L25-B >gi|7490025|pir... 77 3e-14
gi|11426676 ribosomal protein L23a [Homo sapiens] 77 3e-14
sp|Q10330|R25A_SCHPO 60S RIBOSOMAL PROTEIN L25-A >gi|7490021|pir... 76 4e-14
sp|P12732|RL23_HALMA 50S RIBOSOMAL PROTEIN L23P (HMAL23) (HL25) ... 76 8e-14
pdb|1FFK|P Chain P, Crystal Structure Of The Large Ribosomal Sub... 76 8e-14
gb|AAB24907.1| ribosomal-like protein=HLA-F product [human, Pept... 75 1e-13
sp|Q06842|RL23_HALHA 50S RIBOSOMAL PROTEIN L23P >gi|629396|pir||... 75 2e-13
emb|CAA25506.1| (X01014) ribosomal protein L25 [Saccharomyces ce... 70 3e-12
sp|O66433|RL23_AQUAE 50S RIBOSOMAL PROTEIN L23 >gi|7428685|pir||... 69 6e-12
sp|Q9ZI48|RL23_AQUPY 50S RIBOSOMAL PROTEIN L23 >gi|4165867|gb|AA... 69 1e-11
>pir||G75147 lsu ribosomal protein l23p (rpl23p) PAB7083 - Pyrococcus abyssi
(strain Orsay) >gi|5457772|emb|CAB49262.1| (AJ248284)
LSU ribosomal protein L23P (rpl23P) [Pyrococcus abyssi]
Length = 86
Score = 168 bits (422), Expect = 7e-42
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP
Sbjct: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
KGEKKAYVKLKPEYSASEIAARLGLF
Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
>sp|O74095|RL23_PYRHO 50S RIBOSOMAL PROTEIN L23P >gi|7441006|pir||E71187 probable
ribosomal protein L23 - Pyrococcus horikoshii
>gi|3258209|dbj|BAA30892.1| (AP000007) 86aa long
hypothetical 50S ribosomal protein L23 [Pyrococcus
horikoshii]
Length = 86
Score = 163 bits (408), Expect = 3e-40
Identities = 82/86 (95%), Positives = 85/86 (98%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MDPYKVIIRPV+T+KAISLIEKENKLTFIVDRRATK DIK+AIEEIFNVKVEKVNTLITP
Sbjct: 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKTDIKKAIEEIFNVKVEKVNTLITP 60
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
KGEKKAYVKLKPEYSASEIAARLGLF
Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
>sp|P54016|RL23_METJA 50S RIBOSOMAL PROTEIN L23P >gi|2119141|pir||C64322 ribosomal
protein L23 - Methanococcus jannaschii
>gi|1498951|gb|AAB98163.1| (U67474) LSU ribosomal
protein L23P (rplW) [Methanococcus jannaschii]
Length = 86
Score = 124 bits (308), Expect = 2e-28
Identities = 60/86 (69%), Positives = 74/86 (85%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD + VI PV+T+K + +IE+ENKL F VDRRATKQDIKRA++E+F+V+VEKVNTLITP
Sbjct: 1 MDAFDVIKAPVVTEKTVRMIEEENKLVFYVDRRATKQDIKRAMKELFDVEVEKVNTLITP 60
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
KGEKKAYVKLK Y AS+IAA LG++
Sbjct: 61 KGEKKAYVKLKEGYDASKIAASLGIY 86
>sp|P10143|RL23_METVA 50S RIBOSOMAL PROTEIN L23P (ML7) >gi|71294|pir||R5MX23 ribosomal
protein L23 - Methanococcus vannielii
>gi|44745|emb|CAA68741.1| (Y00772) ribosomal protein
L23 [Methanococcus vannielii]
Length = 86
Score = 110 bits (273), Expect = 2e-24
Identities = 49/86 (56%), Positives = 71/86 (81%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD + VI P++++K + LIE+EN+L F V+R+ATK+DIK AI+++FN +V +VNT ITP
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKEDIKEAIKQLFNAEVAEVNTNITP 60
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
KG+KKAY+KLK EY+A E+AA LG++
Sbjct: 61 KGQKKAYIKLKDEYNAGEVAASLGIY 86
>sp|O26112|RL23_METTH 50S RIBOSOMAL PROTEIN L23P >gi|7428686|pir||H69151 ribosomal
protein L23 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621051|gb|AAB84524.1| (AE000795)
ribosomal protein L23a (E.coli L23) [Methanobacterium
thermoautotrophicum]
Length = 100
Score = 109 bits (269), Expect = 6e-24
Identities = 47/86 (54%), Positives = 73/86 (84%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MDPY VI++P +T+K+++LI++ N+L F+V R++TK+D++RA EE+F VKVE+VNT +TP
Sbjct: 15 MDPYAVIMKPHVTEKSMNLIDQNNELAFVVMRKSTKKDVRRAFEELFAVKVERVNTQVTP 74
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
+G+K AY+KL E+SA +IA +LG+F
Sbjct: 75 RGQKIAYIKLAKEHSAEDIAVKLGVF 100
>gi|11499507 LSU ribosomal protein L23P (rpl23P) [Archaeoglobus fulgidus]
>gi|3914714|sp|O28356|RL23_ARCFU 50S RIBOSOMAL PROTEIN
L23P >gi|7428687|pir||B69490 ribosomal protein L23 -
Archaeoglobus fulgidus >gi|2648623|gb|AAB89333.1|
(AE000971) LSU ribosomal protein L23P (rpl23P)
[Archaeoglobus fulgidus]
Length = 83
Score = 100 bits (247), Expect = 2e-21
Identities = 48/76 (63%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
Query: 11 VITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKKAYVKL 70
++T+K+++ +EK N LT IVD RA K+ IK+ IE++FNV+VE+VNTLITPKGEKKAY+KL
Sbjct: 9 LVTEKSVAELEK-NVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKL 67
Query: 71 KPEYSASEIAARLGLF 86
KP+YSA EI ++LG+F
Sbjct: 68 KPDYSAEEILSKLGVF 83
>gb|AAK41016.1| LSU ribosomal protein L23AB (rpl23AB) [Sulfolobus solfataricus]
Length = 81
Score = 98.7 bits (242), Expect = 9e-21
Identities = 47/74 (63%), Positives = 59/74 (79%)
Query: 13 TDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKKAYVKLKP 72
T+KA+ LIE N LT IVD+ TK DIK+++E +FNVKV KVN +ITP+G KKAYVKL P
Sbjct: 8 TEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKKAYVKLAP 67
Query: 73 EYSASEIAARLGLF 86
EY AS+IA +LG+F
Sbjct: 68 EYKASDIAHKLGIF 81
>sp|Q9YFM0|RL23_AERPE 50S RIBOSOMAL PROTEIN L23P >gi|7521363|pir||C72780 probable
ribosomal protein L23 APES004 - Aeropyrum pernix
(strain K1) >gi|5103620|dbj|BAA79141.1| (AP000058) 68aa
long hypothetical 50S ribosomal protein L23 [Aeropyrum
pernix]
Length = 68
Score = 95.6 bits (234), Expect = 8e-20
Identities = 44/66 (66%), Positives = 55/66 (82%)
Query: 19 LIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKKAYVKLKPEYSASE 78
++E+EN LTFIV R ATK D+KRA+E++F VKVEKV TLITP+G KKAYVKL PEY A +
Sbjct: 1 MLEEENTLTFIVRREATKNDVKRAVEQLFGVKVEKVRTLITPRGYKKAYVKLAPEYKALD 60
Query: 79 IAARLG 84
+A +LG
Sbjct: 61 VATKLG 66
>emb|CAA62040.1| (X90414) Chloroplast ribosomal protein L23 [Spinacia oleracea]
Length = 198
Score = 92.1 bits (225), Expect = 9e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+IT+ AI I EN L F VD RA K+ I+ AI F VKV KVNTLI P
Sbjct: 109 LDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRP 168
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
G KKAY+ L EY+ASE+A ++G+F
Sbjct: 169 DGTKKAYIMLNKEYNASELAKKIGIF 194
>sp|P41165|RL2B_TRYBB 60S RIBOSOMAL PROTEIN L23A (L25) >gi|439213|gb|AAC37186.1| (L21172)
ribosomal protein L25 [Trypanosoma brucei]
Length = 164
Score = 89.7 bits (219), Expect = 5e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Query: 2 DPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPK 61
D +++I P+ TDKA+ IE+ N LTFIVD RA K +IK+AI +++ VK KVNTLI P
Sbjct: 80 DAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPD 139
Query: 62 GEKKAYVKLKPEYSASEIAARLGL 85
G KKAY++L Y A + A ++GL
Sbjct: 140 GLKKAYIRLSASYDALDTANKMGL 163
>sp|P29316|RL2B_HUMAN 60S RIBOSOMAL PROTEIN L23A >gi|279654|pir||R3RT3A ribosomal protein
L23a, cytosolic [validated] - rat
>gi|57690|emb|CAA46336.1| (X65228) ribosomal protein
L23a [Rattus rattus] >gi|1399086|gb|AAB03210.1| (U43701)
ribosomal protein L23a [Homo sapiens]
>gi|2739452|gb|AAC51934.1| (AF001689) ribosomal protein
L23A [Homo sapiens]
Length = 156
Score = 88.5 bits (216), Expect = 1e-17
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y +I P+ T+ A+ IE N L FIVD +A K IK+A+++++++ V KVNTLI P
Sbjct: 71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP 130
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
GEKKAYV+L P+Y A ++A ++G+
Sbjct: 131 DGEKKAYVRLAPDYDALDVANKIGI 155
>gb|AAA35681.1| (L13799) homology to rat ribosomal protein L23 [Homo sapiens]
Length = 147
Score = 88.5 bits (216), Expect = 1e-17
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y +I P+ T+ A+ IE N L FIVD +A K IK+A+++++++ V KVNTLI P
Sbjct: 62 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP 121
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
GEKKAYV+L P+Y A ++A ++G+
Sbjct: 122 DGEKKAYVRLAPDYDALDVANKIGI 146
>gb|AAA03341.1| (U02032) ribosomal protein L23a [Homo sapiens]
Length = 156
Score = 88.5 bits (216), Expect = 1e-17
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y +I P+ T+ A+ IE N L FIVD +A K IK+A+++++++ V KVNTLI P
Sbjct: 71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP 130
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
GEKKAYV+L P+Y A ++A ++G+
Sbjct: 131 DGEKKAYVRLAPDYDALDVANKIGI 155
>gb|AAG30009.1|AF281334_1 (AF281334) 60S ribosomal protein [Oncorhynchus mykiss]
Length = 96
Score = 88.2 bits (215), Expect = 1e-17
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y +I P+ T+ A+ IE N L FIVD +A K IK A+++++++ V KVNTLI P
Sbjct: 11 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKHAVKKLYDIDVAKVNTLIRP 70
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
GEKKAYV+L P+Y A ++A ++G+
Sbjct: 71 DGEKKAYVRLAPDYDALDVANKIGI 95
>emb|CAC09501.1| (AL442115) putative 60s Ribosomal protein L25 [Oryza sativa]
Length = 152
Score = 87.8 bits (214), Expect = 2e-17
Identities = 38/85 (44%), Positives = 63/85 (73%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD +A K+ IK A++++++++ +KVNTLI P
Sbjct: 67 LDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP 126
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G+KKAYVKL P+Y A ++A ++G+
Sbjct: 127 DGKKKAYVKLTPDYDALDVANKIGI 151
>pir||T01654 ribosomal protein L23 - maize (fragment) >gi|3264605|gb|AAC24573.1|
(AF061508) ribosomal protein L25 [Zea mays]
Length = 109
Score = 87.8 bits (214), Expect = 2e-17
Identities = 38/85 (44%), Positives = 63/85 (73%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD +A K+ IK A++++++++ +KVNTLI P
Sbjct: 24 LDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP 83
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G+KKAYVKL P+Y A ++A ++G+
Sbjct: 84 DGKKKAYVKLTPDYDALDVANKIGI 108
>gi|4506615 ribosomal protein L23a [Homo sapiens] >gi|1574942|gb|AAB17510.1|
(U37230) ribosomal protein L23a [Homo sapiens]
Length = 156
Score = 86.6 bits (211), Expect = 4e-17
Identities = 39/85 (45%), Positives = 60/85 (69%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y +I P+ T+ A+ IE N L FIVD +A K I +A+++++++ V KVNTLI P
Sbjct: 71 LDHYAIINFPLTTESAMKKIEDNNTLVFIVDVKANKHQISQAVKKLYDIDVAKVNTLIRP 130
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
GEKKAYV+L P+Y A ++A ++G+
Sbjct: 131 DGEKKAYVRLAPDYDALDVANKIGI 155
>sp|O22644|RL2B_FRIAG 60S RIBOSOMAL PROTEIN L23A >gi|2641201|gb|AAB86852.1| (AF031542)
ribosomal protein L23a [Fritillaria agrestis]
Length = 154
Score = 86.6 bits (211), Expect = 4e-17
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRP 128
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAYV+L P+Y A +IA ++G+
Sbjct: 129 DGTKKAYVRLTPDYDALDIANKIGI 153
>pir||T00556 ribosomal protein L23a, cytosolic - Arabidopsis thaliana
>gi|3355475|gb|AAC27837.1| (AC004218) 60S ribosomal
protein L23A [Arabidopsis thaliana]
Length = 154
Score = 85.8 bits (209), Expect = 7e-17
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRP 128
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAYV+L P+Y A ++A ++G+
Sbjct: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
>pir||T47667 ribosomal L23a-like protein - Arabidopsis thaliana
>gi|7019661|emb|CAB75762.1| (AL132954) ribosomal
L23a-like protein [Arabidopsis thaliana]
Length = 154
Score = 85.8 bits (209), Expect = 7e-17
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRP 128
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAYV+L P+Y A ++A ++G+
Sbjct: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
>emb|CAA63107.1| (X92350) ribosomal protein L23 [Spinacia oleracea]
Length = 155
Score = 85.4 bits (208), Expect = 9e-17
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 70 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 129
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAYV+L P+Y A ++A ++G+
Sbjct: 130 DGTKKAYVRLTPDYDALDVANKIGI 154
>emb|CAC12393.1| (AL445067) probable 50S ribosomal protein L23 [Thermoplasma
acidophilum]
Length = 84
Score = 85.4 bits (208), Expect = 9e-17
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 6 VIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKK 65
+II P+ T+K + EKENKLT +V R A ++ IK+ +EE F VKVE +N +IT KG KK
Sbjct: 5 IIISPLSTEKTALMAEKENKLTLMVRRDANREMIKKEVEERFGVKVEGINVMITKKG-KK 63
Query: 66 AYVKLKPEYSASEIAARLGLF 86
A VKL EYSA EIA R+G+F
Sbjct: 64 AIVKLAKEYSAEEIAERIGVF 84
>emb|CAA63112.1| (X92367) ribosomal protein L23 [Spinacia oleracea]
Length = 155
Score = 85.0 bits (207), Expect = 1e-16
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 70 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQSKKVNTLIRP 129
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAYV+L P+Y A ++A ++G+
Sbjct: 130 DGTKKAYVRLTPDYDALDVANKIGI 154
>gb|AAB87692.1| (AF034694) ribosomal protein L23a [Arabidopsis thaliana]
Length = 154
Score = 84.7 bits (206), Expect = 2e-16
Identities = 37/85 (43%), Positives = 62/85 (72%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 69 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRP 128
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAY++L P+Y A ++A ++G+
Sbjct: 129 DGTKKAYMRLTPDYDALDVANKIGI 153
>sp|Q07761|RL2B_TOBAC 60S RIBOSOMAL PROTEIN L23A (L25) >gi|1084424|pir||S48026 ribosomal
protein L23a, cytosolic - common tobacco
>gi|310935|gb|AAA53296.1| (L18908) 60S ribosomal protein
L25 [Nicotiana tabacum]
Length = 154
Score = 83.9 bits (204), Expect = 3e-16
Identities = 37/85 (43%), Positives = 61/85 (71%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D Y ++ P+ T+ A+ IE N L FIVD +A K+ IK A++++++++ +KVNTLI P
Sbjct: 69 LDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRP 128
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G KKAYV+L P+Y A ++A ++G+
Sbjct: 129 DGTKKAYVRLTPDYDALDVANKIGI 153
>sp|Q20647|RL2C_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L23A 2 >gi|7503917|pir||T22496
hypothetical protein F52B5.6 - Caenorhabditis elegans
>gi|3877409|emb|CAA99858.1| (Z75541) contains similarity
to Pfam domain: PF00276 (Ribosomal protein L23),
Score=104.8, E-value=2e-30, N=1~cDNA EST yk110d8.3 comes
from this gene~cDNA EST yk110d8.5 comes from this
gene~cDNA EST yk111b6.5 comes from this gene~cDNA EST
yk375d11.3 co>
Length = 146
Score = 83.5 bits (203), Expect = 3e-16
Identities = 40/84 (47%), Positives = 56/84 (66%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D + VI P T+ ++ IE N L FIVD +A K IKRA+ ++NVK KVNTLITP
Sbjct: 61 LDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITP 120
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
+KKAYV+L +Y A ++A ++G
Sbjct: 121 LQQKKAYVRLASDYDALDVANKIG 144
>pir||S41653 ribosomal protein L25, cytosolic - Trypanosoma brucei
Length = 156
Score = 82.3 bits (200), Expect = 8e-16
Identities = 39/73 (53%), Positives = 52/73 (70%)
Query: 2 DPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPK 61
D +++I P+ TDKA+ IE+ N LTFIVD RA K +IK+AI +++ VK KVNTLI P
Sbjct: 80 DAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPD 139
Query: 62 GEKKAYVKLKPEY 74
G KKAY++L Y
Sbjct: 140 GLKKAYIRLSASY 152
>gi|6324445 Ribosomal protein L25 (rpl6L) (YL25); Rpl25p [Saccharomyces
cerevisiae] >gi|1710524|sp|P04456|RL25_YEAST 60S
RIBOSOMAL PROTEIN L25 (YL25) (RP61L)
>gi|2144777|pir||R5BY25 ribosomal protein L23a.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|1209714|gb|AAC49465.1| (U41293) putative ribosomal
protein L25 [Saccharomyces cerevisiae]
>gi|1420011|emb|CAA99146.1| (Z74869) ORF YOL127w
[Saccharomyces cerevisiae]
Length = 142
Score = 81.9 bits (199), Expect = 1e-15
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YKVI +P+ ++ A+ +E N L F V +A K IK+A++E++ V V KVNTL+ P
Sbjct: 57 LDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP 116
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKAYV+L +Y A +IA R+G
Sbjct: 117 NGTKKAYVRLTADYDALDIANRIG 140
>sp|P48162|RL2B_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L23A 1 >gi|7441026|pir||T16456
hypothetical protein F55D10.2 - Caenorhabditis elegans
>gi|1072225|gb|AAA81728.1| (U40948) coded for by C.
elegans cDNA CEESM88F; similar to ribosomal protein L23
[Caenorhabditis elegans]
Length = 147
Score = 81.5 bits (198), Expect = 1e-15
Identities = 38/85 (44%), Positives = 58/85 (67%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD +++I P+ T+ A+ IE+ N L FIV A K IK A+ +++NV+ KVNTLITP
Sbjct: 62 MDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITP 121
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
+KKAYV+L +Y A ++A ++G+
Sbjct: 122 LQQKKAYVRLTADYDALDVANKIGV 146
>sp|P51997|RL2B_PUCGR 60S RIBOSOMAL PROTEIN L23A (L25) >gi|1707876|gb|AAB41938.1|
(U44800) ribosomal protein L23a [Puccinia graminis f.
sp. avenae]
Length = 158
Score = 81.5 bits (198), Expect = 1e-15
Identities = 38/84 (45%), Positives = 59/84 (70%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD Y+ ++RP+ T+ A+ IE N L FIVD +A K+ I A++++++V +VNTLI P
Sbjct: 73 MDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRP 132
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G+KKA+V+L PE A +IA ++G
Sbjct: 133 DGKKKAFVRLTPEVDALDIANKIG 156
>gb|AAF37874.1|AF234162_1 (AF234162) ribosomal protein L25 [Leishmania braziliensis]
Length = 145
Score = 80.8 bits (196), Expect = 2e-15
Identities = 40/82 (48%), Positives = 56/82 (67%)
Query: 4 YKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGE 63
+ VI P+ TDKA+ IE+ N LTFIVD A K +IK+A+ +++ VK KVNTLI P G
Sbjct: 63 FSVIRYPLTTDKAMKKIEENNTLTFIVDACANKTEIKKAMRKLYQVKAVKVNTLIRPDGL 122
Query: 64 KKAYVKLKPEYSASEIAARLGL 85
KKAY++L + A + A ++GL
Sbjct: 123 KKAYIRLSAAHDALDTANKIGL 144
>pir||S30000 ribosomal protein L23a.e - yeast (Kluyveromyces marxianus)
Length = 142
Score = 80.4 bits (195), Expect = 3e-15
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YKVI +P+ ++ A+ +E N L F V +A K IK+A++E++ V V VNTL+ P
Sbjct: 57 LDSYKVIEQPITSETAMKKVEDGNTLVFQVSLKANKYQIKKAVKELYEVDVLNVNTLVRP 116
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKAYV+L +Y A +IA R+G
Sbjct: 117 NGTKKAYVRLTADYDALDIANRIG 140
>gb|AAD19340.1| (AF080130) ribosomal protein L23a [Drosophila melanogaster]
Length = 269
Score = 80.0 bits (194), Expect = 4e-15
Identities = 36/85 (42%), Positives = 56/85 (65%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD Y +I P+ T+ A+ IE N L F+ RA K ++ A+ +++++KV KVN LI P
Sbjct: 184 MDAYNIIKYPLTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRP 243
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G+KKAYV+L +Y A +IA ++G+
Sbjct: 244 DGQKKAYVRLARDYDALDIANKIGI 268
>gb|AAF47545.1| (AE003472) RpL23a gene product [Drosophila melanogaster]
Length = 277
Score = 80.0 bits (194), Expect = 4e-15
Identities = 36/85 (42%), Positives = 56/85 (65%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD Y +I P+ T+ A+ IE N L F+ RA K ++ A+ +++++KV KVN LI P
Sbjct: 192 MDAYNIIKYPLTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRP 251
Query: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
G+KKAYV+L +Y A +IA ++G+
Sbjct: 252 DGQKKAYVRLARDYDALDIANKIGI 276
>gb|AAD22096.1| (AF128456) ribosomal protein L23A [Entamoeba histolytica]
Length = 119
Score = 79.6 bits (193), Expect = 5e-15
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
MD + +I P+ T+ A+ IE N L F+ +++A K IK+A+E+ + VKV KVNTL+
Sbjct: 34 MDEFSIIKFPLATETALKKIEDHNTLVFLCEQKANKTMIKKAVEKRYGVKVIKVNTLVRL 93
Query: 61 KGEKKAYVKLKPEYSASEIAARLGLF 86
G KKA+V+L P+ A E+A ++GLF
Sbjct: 94 DGLKKAFVRLAPDVEAMEVATKIGLF 119
>sp|P08792|RL25_PICJA 60S RIBOSOMAL PROTEIN L25 >gi|71310|pir||R5HQ25 ribosomal protein
L23a.e - yeast (Pichia jadinii) >gi|2680|emb|CAA29354.1|
(X05919) L25 protein [Candida utilis]
Length = 142
Score = 79.2 bits (192), Expect = 7e-15
Identities = 37/84 (44%), Positives = 57/84 (67%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YKVI+ P+ ++ A+ +E N L F VD +A K IK+A+++++ V V VNTLI P
Sbjct: 57 LDNYKVIVAPIASETAMKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRP 116
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKAYV+L ++ A +IA ++G
Sbjct: 117 NGTKKAYVRLTADHDALDIANKIG 140
>sp|P48045|RL25_KLULA 60S RIBOSOMAL PROTEIN L25 >gi|320177|pir||S29999 ribosomal protein
L23a.e - yeast (Kluyveromyces marxianus var. lactis)
>gi|263475|gb|AAB24896.1| (S53176) L25=ribosomal protein
[Kluyveromyces lactis, Peptide, 142 aa]
Length = 142
Score = 78.8 bits (191), Expect = 9e-15
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YKVI +P+ ++ A+ +E N L F V +A K IK+A++E++ V V VNTL+ P
Sbjct: 57 LDSYKVIEQPITSETAMKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRP 116
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKAYV+L ++ A +IA R+G
Sbjct: 117 NGTKKAYVRLTADFDALDIANRIG 140
>sp|O74391|R25B_SCHPO 60S RIBOSOMAL PROTEIN L25-B >gi|7490025|pir||T40501 60s ribosomal
protein l25 - fission yeast (Schizosaccharomyces pombe)
>gi|3560137|emb|CAA20724.1| (AL031534) 60s ribosomal
protein l25. [Schizosaccharomyces pombe]
Length = 141
Score = 76.9 bits (186), Expect = 3e-14
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YK+I+ P+ ++ A+ IE +N L F V +A K IK A++++++V K+NTLI P
Sbjct: 56 LDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRP 115
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKA+VKL + A ++A R+G
Sbjct: 116 NGTKKAFVKLSADADALDVANRIG 139
>gi|11426676 ribosomal protein L23a [Homo sapiens]
Length = 70
Score = 76.9 bits (186), Expect = 3e-14
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 20 IEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKKAYVKLKPEYSASEI 79
IE N L FIVD +A K IK+A+++++++ V KVNTLI P GEKKAYV+L P+Y A ++
Sbjct: 4 IEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDV 63
Query: 80 AARLGL 85
A ++G+
Sbjct: 64 ANKIGI 69
>sp|Q10330|R25A_SCHPO 60S RIBOSOMAL PROTEIN L25-A >gi|7490021|pir||T37983 60s ribosomal
protein L23a or L25 - fission yeast
(Schizosaccharomyces pombe) >gi|7490026|pir||T39275 60s
ribosomal protein l25-a - fission yeast
(Schizosaccharomyces pombe) >gi|1216252|emb|CAA93794.1|
(Z69909) 60s ribosomal protein L23a or L25
[Schizosaccharomyces pombe] >gi|5817284|emb|CAB53734.1|
(AL110295) 60s ribosomal protein l25-a
[Schizosaccharomyces pombe]
Length = 141
Score = 76.5 bits (185), Expect = 4e-14
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YK+I+ P+ ++ A+ IE +N L F V +A K IK A+ ++++V+ K+NTLI P
Sbjct: 56 LDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRP 115
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKA+VKL + A ++A R+G
Sbjct: 116 NGTKKAFVKLSADADALDVANRIG 139
>sp|P12732|RL23_HALMA 50S RIBOSOMAL PROTEIN L23P (HMAL23) (HL25) (L21)
>gi|2144776|pir||R5HS23 ribosomal protein L23
[validated] - Haloarcula marismortui
>gi|148803|gb|AAA86861.1| (J05222) ribosomal protein
L23 [Haloarcula marismortui]
Length = 85
Score = 75.7 bits (183), Expect = 8e-14
Identities = 38/83 (45%), Positives = 59/83 (70%)
Query: 4 YKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGE 63
+ VI P +T+KA++ ++ +NKL F VD RA+K ++ A+EE ++V VE+VNT T GE
Sbjct: 3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 62
Query: 64 KKAYVKLKPEYSASEIAARLGLF 86
KKA V+L + A E+A+R+G+F
Sbjct: 63 KKAVVRLSEDDDAQEVASRIGVF 85
>pdb|1FFK|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 84
Score = 75.7 bits (183), Expect = 8e-14
Identities = 38/83 (45%), Positives = 59/83 (70%)
Query: 4 YKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGE 63
+ VI P +T+KA++ ++ +NKL F VD RA+K ++ A+EE ++V VE+VNT T GE
Sbjct: 2 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61
Query: 64 KKAYVKLKPEYSASEIAARLGLF 86
KKA V+L + A E+A+R+G+F
Sbjct: 62 KKAVVRLSEDDDAQEVASRIGVF 84
>gb|AAB24907.1| ribosomal-like protein=HLA-F product [human, Peptide Partial, 86
aa]
Length = 86
Score = 75.3 bits (182), Expect = 1e-13
Identities = 36/82 (43%), Positives = 55/82 (66%)
Query: 4 YKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGE 63
+ VII+ +T +A+ IE + L F VD +A K IK+A+ E+ ++ V KVNTLI GE
Sbjct: 4 HHVIIKFPLTTEAVKKIENNSLLVFTVDVKANKHQIKQAVXEVCDIDVAKVNTLIQSDGE 63
Query: 64 KKAYVKLKPEYSASEIAARLGL 85
+KAYV+L P+Y A +A ++G+
Sbjct: 64 RKAYVRLAPDYDALVVATKIGI 85
>sp|Q06842|RL23_HALHA 50S RIBOSOMAL PROTEIN L23P >gi|629396|pir||S43422 ribosomal
protein L23 [validated] - Halobacterium salinarum
>gi|2425178|dbj|BAA22272.1| (AB006961) ribosomal
protein L23 [Halobacterium halobium]
>gi|10581161|gb|AAG19938.1| (AE005077) 50S ribosomal
protein L23P; Rpl23p [Halobacterium sp. NRC-1]
Length = 84
Score = 74.5 bits (180), Expect = 2e-13
Identities = 37/81 (45%), Positives = 56/81 (68%)
Query: 6 VIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKGEKK 65
+I P++T+KA+ ++ +NKL FIVD A K +I+ +E ++V V VNT ITP+ EKK
Sbjct: 4 IIDYPLVTEKAMDEMDFQNKLQFIVDIDAAKPEIRDVVESEYDVTVVDVNTQITPEAEKK 63
Query: 66 AYVKLKPEYSASEIAARLGLF 86
A VKL E A ++A+R+G+F
Sbjct: 64 ATVKLSAEDDAQDVASRIGVF 84
>emb|CAA25506.1| (X01014) ribosomal protein L25 [Saccharomyces cerevisiae]
Length = 137
Score = 70.2 bits (169), Expect = 3e-12
Identities = 35/84 (41%), Positives = 54/84 (63%), Gaps = 5/84 (5%)
Query: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
+D YKVI +P+ ++ A+ +E N L F V +A K IK+A++E++ +VN L+ P
Sbjct: 57 LDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELY-----EVNILVRP 111
Query: 61 KGEKKAYVKLKPEYSASEIAARLG 84
G KKAYV+L +Y A +IA R+G
Sbjct: 112 NGTKKAYVRLTADYDALDIANRIG 135
>sp|O66433|RL23_AQUAE 50S RIBOSOMAL PROTEIN L23 >gi|7428685|pir||F70300 ribosomal
protein L23 - Aquifex aeolicus
>gi|2982771|gb|AAC06397.1| (AE000669) ribosomal protein
L23 [Aquifex aeolicus]
Length = 103
Score = 69.5 bits (167), Expect = 6e-12
Identities = 33/69 (47%), Positives = 51/69 (73%)
Query: 3 PYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKG 62
P+++IIRP+IT+K+ L+E NK TF V A+K +IK A+E++FNVKV+KVNT+I
Sbjct: 6 PWEIIIRPIITEKSNRLMEDYNKYTFEVALDASKPEIKYAVEKLFNVKVKKVNTMIVKPK 65
Query: 63 EKKAYVKLK 71
+K+ + K +
Sbjct: 66 KKRVWNKFR 74
>sp|Q9ZI48|RL23_AQUPY 50S RIBOSOMAL PROTEIN L23 >gi|4165867|gb|AAD08787.1| (AF040100)
ribosomal protein L23 [Aquifex pyrophilus]
Length = 109
Score = 68.7 bits (165), Expect = 1e-11
Identities = 31/69 (44%), Positives = 51/69 (72%)
Query: 3 PYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITPKG 62
P++++IRP+IT+K+ L+E NK TF V A+K +IK A+E++FNVKV+KVNT+I
Sbjct: 6 PWEILIRPIITEKSNRLMEDYNKYTFEVALDASKPEIKEAVEKLFNVKVKKVNTMIVKPK 65
Query: 63 EKKAYVKLK 71
+K+ + + +
Sbjct: 66 KKRVWERFR 74
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.359
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26978493
Number of Sequences: 2977
Number of extensions: 840367
Number of successful extensions: 3413
Number of sequences better than 1.0e-10: 47
Number of HSP's better than 0.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3366
Number of HSP's gapped (non-prelim): 47
length of query: 86
length of database: 189,106,746
effective HSP length: 56
effective length of query: 30
effective length of database: 155,591,474
effective search space: 4667744220
effective search space used: 4667744220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 157 (65.6 bits)