BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7092 (rpl35AE) DE:LSU ribosomal protein L35AE.
         (87 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75153 probable ribosomal protein L35 - Pyrococcus abyssi (...   174  1e-43
sp|O74099|R35A_PYRHO 50S RIBOSOMAL PROTEIN L35AE >gi|7434753|pir...   169  5e-42
sp|P20299|R35A_PYRWO 50S RIBOSOMAL PROTEIN L35AE >gi|76326|pir||...   166  4e-41

>pir||D75153 probable ribosomal protein L35 - Pyrococcus abyssi (strain Orsay)
          >gi|5457817|emb|CAB49307.1| (AJ248284) LSU ribosomal
          protein L35AE. [Pyrococcus abyssi]
          Length = 87
          
 Score =  174 bits (437), Expect = 1e-43
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRV 60
          MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRV
Sbjct: 1  MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRV 60

Query: 61 HGTKGAVRARFEKGLPGQALGDYVEII 87
          HGTKGAVRARFEKGLPGQALGDYVEII
Sbjct: 61 HGTKGAVRARFEKGLPGQALGDYVEII 87


>sp|O74099|R35A_PYRHO 50S RIBOSOMAL PROTEIN L35AE >gi|7434753|pir||F71194 probable
          ribosomal protein L35 - Pyrococcus horikoshii
          >gi|3258266|dbj|BAA30949.1| (AP000007) 87aa long
          hypothetical 50S ribosomal protein L35 [Pyrococcus
          horikoshii]
          Length = 87
          
 Score =  169 bits (424), Expect = 5e-42
 Identities = 82/87 (94%), Positives = 87/87 (99%)

Query: 1  MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRV 60
          MRIKGVVLSYRRSKENQHTNVMIIKPL++NSREEASKLIGRLV+WKSPSGK+LKGKIVRV
Sbjct: 1  MRIKGVVLSYRRSKENQHTNVMIIKPLDINSREEASKLIGRLVVWKSPSGKVLKGKIVRV 60

Query: 61 HGTKGAVRARFEKGLPGQALGDYVEII 87
          HGT+GAVRARFEKGLPGQALGDYVEII
Sbjct: 61 HGTRGAVRARFEKGLPGQALGDYVEII 87


>sp|P20299|R35A_PYRWO 50S RIBOSOMAL PROTEIN L35AE >gi|76326|pir||QQQYYW probable
          ribosomal protein L35 - Pyrococcus woesei
          Length = 87
          
 Score =  166 bits (416), Expect = 4e-41
 Identities = 81/87 (93%), Positives = 85/87 (97%)

Query: 1  MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIWKSPSGKLLKGKIVRV 60
          M IKGVVLSYRRSKENQH NVMIIKPL+VNSREEASKLIGRLV+WKSPSGK+LKGKIVRV
Sbjct: 1  MSIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRV 60

Query: 61 HGTKGAVRARFEKGLPGQALGDYVEII 87
          HGTKGAVRARFEKGLPGQALGDYVEI+
Sbjct: 61 HGTKGAVRARFEKGLPGQALGDYVEIV 87


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30279695
Number of Sequences: 2977
Number of extensions: 1003024
Number of successful extensions: 2529
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2526
Number of HSP's gapped (non-prelim): 3
length of query: 87
length of database: 189,106,746
effective HSP length: 52
effective length of query: 35
effective length of database: 157,985,422
effective search space: 5529489770
effective search space used: 5529489770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 158 (66.0 bits)