BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7094 (Hypoth) DE:conserved hypothetical protein
(93 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75154 conserved hypothetical protein PAB7094 - Pyrococcus ... 182 7e-46
pir||A71196 hypothetical protein PHS053 - Pyrococcus horikoshii ... 180 2e-45
gi|11499538 conserved hypothetical protein [Archaeoglobus fulgid... 124 2e-28
gi|11498672 conserved hypothetical protein [Archaeoglobus fulgid... 118 1e-26
gb|AAK41236.1| DNA binding protein SSO10b [Sulfolobus solfataricus] 111 2e-24
pir||T29101 hypothetical protein - Sulfolobus shibatae >gi|16798... 111 2e-24
pir||F69064 conserved hypothetical protein MTH1483 - Methanobact... 107 3e-23
sp|Q57665|Y212_METJA HYPOTHETICAL PROTEIN MJ0212 >gi|2128181|pir... 104 1e-22
emb|CAC12041.1| (AL445065) probable DNA binding protein (Ssh10b ... 97 3e-20
pir||E72567 hypothetical protein APE1823 - Aeropyrum pernix (str... 82 1e-15
>pir||E75154 conserved hypothetical protein PAB7094 - Pyrococcus abyssi
(strain Orsay) >gi|5457826|emb|CAB49316.1| (AJ248284)
conserved hypothetical protein [Pyrococcus abyssi]
Length = 93
Score = 182 bits (457), Expect = 7e-46
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV 60
MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV
Sbjct: 1 MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV 60
Query: 61 DVKEIKIGTEELPTADGRTTNTSTIEIVLARKA 93
DVKEIKIGTEELPTADGRTTNTSTIEIVLARKA
Sbjct: 61 DVKEIKIGTEELPTADGRTTNTSTIEIVLARKA 93
>pir||A71196 hypothetical protein PHS053 - Pyrococcus horikoshii
>gi|3258277|dbj|BAA30960.1| (AP000007) 93aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 93
Score = 180 bits (453), Expect = 2e-45
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV 60
MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV
Sbjct: 1 MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV 60
Query: 61 DVKEIKIGTEELPTADGRTTNTSTIEIVLARK 92
DVKEIKIGTEELPTADGRTTNTSTIEIVLARK
Sbjct: 61 DVKEIKIGTEELPTADGRTTNTSTIEIVLARK 92
>gi|11499538 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483187|pir||C69494 conserved hypothetical protein
AF1956 - Archaeoglobus fulgidus
>gi|2648586|gb|AAB89299.1| (AE000968) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 89
Score = 124 bits (308), Expect = 2e-28
Identities = 66/88 (75%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
Query: 4 EHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVDVK 63
EHVVY+G KPVMNYVLA +TQ +EGA EV IKARGRAISRAVDVAEIVRNRF+ V VK
Sbjct: 3 EHVVYVGNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFM-PGVKVK 61
Query: 64 EIKIGTEELPTADGRTTNTSTIEIVLAR 91
EIKI TEEL + GR +N STIEIVLA+
Sbjct: 62 EIKIDTEELESEQGRRSNVSTIEIVLAK 89
>gi|11498672 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483085|pir||C69383 conserved hypothetical protein
AF1067 - Archaeoglobus fulgidus
>gi|2649521|gb|AAB90173.1| (AE001029) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 89
Score = 118 bits (292), Expect = 1e-26
Identities = 63/89 (70%), Positives = 74/89 (82%), Gaps = 2/89 (2%)
Query: 4 EHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVDVK 63
E+ V++G KPVMNYVLAV+TQF+ GA EVSIKARGRAISRAVDVAEIVR RFL DVDVK
Sbjct: 3 ENSVFVGNKPVMNYVLAVLTQFNSGATEVSIKARGRAISRAVDVAEIVRKRFL-PDVDVK 61
Query: 64 EIKIGTEELPTADGRTTNTSTIEIVLARK 92
+IKI TE++ + G T N S IEI+LA+K
Sbjct: 62 DIKISTEQIDSEQG-TANVSAIEIILAKK 89
>gb|AAK41236.1| DNA binding protein SSO10b [Sulfolobus solfataricus]
Length = 100
Score = 111 bits (274), Expect = 2e-24
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 2 TEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVD 61
T +VV IGKKPVMNYVLA +T ++G E+ IKARGRAIS+AVD EIVRNRFL D ++
Sbjct: 10 TPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIE 69
Query: 62 VKEIKIGTEELPTADGRTTNTSTIEIVLARK 92
+KEI++G++ + + DGR + STIEI + +K
Sbjct: 70 IKEIRVGSQVVTSQDGRQSRVSTIEIAIRKK 100
>pir||T29101 hypothetical protein - Sulfolobus shibatae
>gi|1679874|emb|CAA67066.1| (X98420) unknown
[Sulfolobus shibatae] >gi|10697160|emb|CAC12668.1|
(AJ298830) putative histone-like protein [Sulfolobus
solfataricus]
Length = 97
Score = 111 bits (274), Expect = 2e-24
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 2 TEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVD 61
T +VV IGKKPVMNYVLA +T ++G E+ IKARGRAIS+AVD EIVRNRFL D ++
Sbjct: 7 TPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIE 66
Query: 62 VKEIKIGTEELPTADGRTTNTSTIEIVLARK 92
+KEI++G++ + + DGR + STIEI + +K
Sbjct: 67 IKEIRVGSQVVTSQDGRQSRVSTIEIAIRKK 97
>pir||F69064 conserved hypothetical protein MTH1483 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622599|gb|AAB85958.1| (AE000909) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 92
Score = 107 bits (264), Expect = 3e-23
Identities = 57/91 (62%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 1 MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV 60
M+EE+VVYIG KPVMNYVLAV+TQ + G EV +KARG AISRAVDVAEIVRNRF+ D+
Sbjct: 2 MSEENVVYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFI-PDI 60
Query: 61 DVKEIKIGTEELPTADGRTTNTSTIEIVLAR 91
++ I I TEE+ +G TN S IEI L +
Sbjct: 61 QIENIDICTEEIIGNEGTATNVSAIEIQLRK 91
>sp|Q57665|Y212_METJA HYPOTHETICAL PROTEIN MJ0212 >gi|2128181|pir||E64326 hypothetical
protein MJ0212 - Methanococcus jannaschii
>gi|1498988|gb|AAB98197.1| (U67477) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 87
Score = 104 bits (258), Expect = 1e-22
Identities = 54/88 (61%), Positives = 72/88 (81%), Gaps = 2/88 (2%)
Query: 4 EHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVDVK 63
++VV IGKKPVMNYV+AV+TQ EV IKARG+AI++AVDVAE++RNRF+K D+ +K
Sbjct: 2 DNVVLIGKKPVMNYVVAVLTQLTSN-DEVIIKARGKAINKAVDVAEMIRNRFIK-DIKIK 59
Query: 64 EIKIGTEELPTADGRTTNTSTIEIVLAR 91
+I+IGT+++ DGR N STIEIVLA+
Sbjct: 60 KIEIGTDKVKNPDGREVNVSTIEIVLAK 87
>emb|CAC12041.1| (AL445065) probable DNA binding protein (Ssh10b related)
[Thermoplasma acidophilum]
Length = 89
Score = 97.1 bits (238), Expect = 3e-20
Identities = 49/91 (53%), Positives = 69/91 (74%), Gaps = 2/91 (2%)
Query: 1 MTEEHVVYIGKKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDV 60
M EE+++++GKKP MNYVLAV+TQF+ A ++ IKARG+ IS+AVDVAEI R++F+ D
Sbjct: 1 MAEENIIFVGKKPTMNYVLAVVTQFNNNANKIIIKARGKTISKAVDVAEITRHKFI-PDA 59
Query: 61 DVKEIKIGTEELPTADGRTTNTSTIEIVLAR 91
+EIK+ TE L G ++N S+IEI L+R
Sbjct: 60 KYEEIKLDTETLQGERG-SSNVSSIEITLSR 89
>pir||E72567 hypothetical protein APE1823 - Aeropyrum pernix (strain K1)
>gi|5105513|dbj|BAA80826.1| (AP000062) 102aa long
hypothetical protein [Aeropyrum pernix]
Length = 102
Score = 81.9 bits (199), Expect = 1e-15
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 6/90 (6%)
Query: 7 VYIGKKPVMNYVLAVITQFHE-GAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVDVKEI 65
V IG+KPVMNYVLA++T E G +V +KARGR I+RAVD EIVR RF K ++++K+I
Sbjct: 9 VRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAK-NIEIKDI 67
Query: 66 KIGTEEL----PTADGRTTNTSTIEIVLAR 91
KI ++E+ P RT S+IEI L +
Sbjct: 68 KIDSQEIEVQTPEGQTRTRRVSSIEICLEK 97
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.133 0.352
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28488984
Number of Sequences: 2977
Number of extensions: 874748
Number of successful extensions: 2153
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 10
length of query: 93
length of database: 189,106,746
effective HSP length: 58
effective length of query: 35
effective length of database: 154,394,500
effective search space: 5403807500
effective search space used: 5403807500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 157 (65.6 bits)