BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7115 (PAB7115) DE:transcriptional regulatory protein, AsnC
family
         (76 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75165 transcription regulatory protein, asnc family PAB711...   152  4e-37
pir||G71176 probable transcription regulator - Pyrococcus horiko...   132  7e-31
pir||E71108 probable regulatory protein AsnC - Pyrococcus horiko...    75  1e-13
pir||H75051 hypothetical protein PAB7359 - Pyrococcus abyssi (st...    75  2e-13

>pir||C75165 transcription regulatory protein, asnc family PAB7115 -
          Pyrococcus abyssi (strain Orsay)
          >gi|5457912|emb|CAB49402.1| (AJ248284) transcriptional
          regulatory protein, AsnC family [Pyrococcus abyssi]
          Length = 76
          
 Score =  152 bits (381), Expect = 4e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MDVFILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLR 60
          MDVFILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLR
Sbjct: 1  MDVFILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLR 60

Query: 61 KLPGIELSETLIASSY 76
          KLPGIELSETLIASSY
Sbjct: 61 KLPGIELSETLIASSY 76


>pir||G71176 probable transcription regulator - Pyrococcus horikoshii
          >gi|3258123|dbj|BAA30806.1| (AP000007) 74aa long
          hypothetical transcriptional regulator [Pyrococcus
          horikoshii]
          Length = 74
          
 Score =  132 bits (328), Expect = 7e-31
 Identities = 61/74 (82%), Positives = 73/74 (98%)

Query: 3  VFILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLRKL 62
          +FILLV+RPGLENEVYEKLK+RPEVKEIY++YGDYDI++RLS++GIKALD+FHD+VLRKL
Sbjct: 1  MFILLVVRPGLENEVYEKLKDRPEVKEIYRLYGDYDIIIRLSVEGIKALDEFHDKVLRKL 60

Query: 63 PGIELSETLIASSY 76
           GIE+SETLIASSY
Sbjct: 61 RGIEISETLIASSY 74


>pir||E71108 probable regulatory protein AsnC - Pyrococcus horikoshii
          >gi|3257044|dbj|BAA29727.1| (AP000003) 75aa long
          hypothetical regulatory protein AsnC [Pyrococcus
          horikoshii]
          Length = 75
          
 Score = 74.9 bits (181), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 50/70 (71%)

Query: 4  FILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLRKLP 63
          FIL+V   G E EV EKL   PEVKE Y VYG+YD+++++  D +K LD+F  E +RK+P
Sbjct: 5  FILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMP 64

Query: 64 GIELSETLIA 73
           I+++ T+IA
Sbjct: 65 EIQMTSTMIA 74


>pir||H75051 hypothetical protein PAB7359 - Pyrococcus abyssi (strain Orsay)
          >gi|5458822|emb|CAB50309.1| (AJ248287) hypothetical
          protein [Pyrococcus abyssi]
          Length = 75
          
 Score = 74.5 bits (180), Expect = 2e-13
 Identities = 35/70 (50%), Positives = 50/70 (71%)

Query: 4  FILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLRKLP 63
          FIL+V   G E EV EKL   PEVKE Y VYG+YD+++++  D +K LD+F  E +RK+P
Sbjct: 5  FILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERIRKMP 64

Query: 64 GIELSETLIA 73
           I+++ T+IA
Sbjct: 65 EIQMTSTMIA 74


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.145    0.399 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26542183
Number of Sequences: 2977
Number of extensions: 928235
Number of successful extensions: 2683
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2679
Number of HSP's gapped (non-prelim): 4
length of query: 76
length of database: 189,106,746
effective HSP length: 50
effective length of query: 26
effective length of database: 159,182,396
effective search space: 4138742296
effective search space used: 4138742296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 156 (65.2 bits)