BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7122 (PAB7122) DE:Hypothetical protein
         (92 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75167 hypothetical protein PAB7122 - Pyrococcus abyssi (st...   180  4e-45
sp|Q58035|Y618_METJA HYPOTHETICAL PROTEIN MJ0618 >gi|2128409|pir...    86  6e-17
pir||G69184 conserved hypothetical protein MTH637 - Methanobacte...    73  6e-13

>pir||H75167 hypothetical protein PAB7122 - Pyrococcus abyssi (strain Orsay)
          >gi|5457933|emb|CAB49423.1| (AJ248284) hypothetical
          protein [Pyrococcus abyssi]
          Length = 92
          
 Score =  180 bits (451), Expect = 4e-45
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MLKEVREGVILRVIVKPNARENSIEGIDEWRGRIKVNIKAQPVKGKANRELIKFLSNLFG 60
          MLKEVREGVILRVIVKPNARENSIEGIDEWRGRIKVNIKAQPVKGKANRELIKFLSNLFG
Sbjct: 1  MLKEVREGVILRVIVKPNARENSIEGIDEWRGRIKVNIKAQPVKGKANRELIKFLSNLFG 60

Query: 61 AEVEILKGETSREKDVLVRGVNLEEVKRRLKL 92
          AEVEILKGETSREKDVLVRGVNLEEVKRRLKL
Sbjct: 61 AEVEILKGETSREKDVLVRGVNLEEVKRRLKL 92


>sp|Q58035|Y618_METJA HYPOTHETICAL PROTEIN MJ0618 >gi|2128409|pir||B64377 conserved
          hypothetical protein MJ0618 - Methanococcus jannaschii
          >gi|1591329|gb|AAB98613.1| (U67510) conserved
          hypothetical protein [Methanococcus jannaschii]
          Length = 98
          
 Score = 86.2 bits (210), Expect = 6e-17
 Identities = 40/91 (43%), Positives = 63/91 (68%)

Query: 1  MLKEVREGVILRVIVKPNARENSIEGIDEWRGRIKVNIKAQPVKGKANRELIKFLSNLFG 60
          ++KE REGV++ + V+ NA++N I GI+EWR R+ + IKA   +GKAN+E+IKF   +F 
Sbjct: 5  IIKESREGVLIDIDVQANAKKNEIVGINEWRKRLSIKIKAPATEGKANKEIIKFFKEIFK 64

Query: 61 AEVEILKGETSREKDVLVRGVNLEEVKRRLK 91
           +VEI+ G+ + +K VL+  +  +EV   LK
Sbjct: 65 KDVEIVSGKLNPQKTVLIGDIKKDEVIEILK 95


>pir||G69184 conserved hypothetical protein MTH637 - Methanobacterium
          thermoautotrophicum (strain Delta H)
          >gi|2621719|gb|AAB85143.1| (AE000844) conserved protein
          [Methanobacterium thermoautotrophicum]
          Length = 104
          
 Score = 73.0 bits (176), Expect = 6e-13
 Identities = 34/80 (42%), Positives = 54/80 (67%)

Query: 2  LKEVREGVILRVIVKPNARENSIEGIDEWRGRIKVNIKAQPVKGKANRELIKFLSNLFGA 61
          L+EV + +++ + V P + +  I   +EWR RI+V I + P KGKANRE+IK  S  FG 
Sbjct: 7  LREVGDDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFGR 66

Query: 62 EVEILKGETSREKDVLVRGV 81
          +VEI+ G+ SR+K + ++G+
Sbjct: 67 DVEIVSGQKSRQKTIRIQGM 86


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.139    0.371 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29477897
Number of Sequences: 2977
Number of extensions: 997588
Number of successful extensions: 2485
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2482
Number of HSP's gapped (non-prelim): 3
length of query: 92
length of database: 189,106,746
effective HSP length: 55
effective length of query: 37
effective length of database: 156,189,961
effective search space: 5779028557
effective search space used: 5779028557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)