BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7131 (rpoN) DE:DNA-directed RNA polymerase, subunit N (rpoN)
(65 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V194|RPON_PYRAB DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|7... 141 1e-33
pir||H71042 probable DNA-directed RNA polymerase subunit N - Pyr... 140 2e-33
sp|O59298|RPON_PYRHO DNA-DIRECTED RNA POLYMERASE SUBUNIT N 139 3e-33
gb|AAK40429.1| DNA-directed RNA polymerase, subunit N (rpoN) [Su... 99 7e-21
sp|P39472|RPON_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|6... 97 3e-20
sp|P29199|RPON_HALMA DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|9... 89 8e-18
sp|O26147|RPON_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT N (RPB1... 82 7e-16
pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna Poly... 82 1e-15
emb|CAC11573.1| (AL445064) DNA-directed RNA polymerase, chain N ... 80 2e-15
gb|AAG19524.1| (AE005043) DNA-directed RNA polymerase subunit N;... 80 4e-15
gb|AAG37957.1| (AC087079) Hypothetical protein Y37E3.m [Caenorha... 79 6e-15
sp|Q9VC49|RPBX_DROME DNA-DIRECTED RNA POLYMERASE II 7.6 KDA POLY... 78 8e-15
gi|10863925 polymerase (RNA) II (DNA directed) polypeptide L (7.... 78 1e-14
sp|Q9SYA6|RPBX_ARATH DNA-DIRECTED RNA POLYMERASE II 8.2 KDA POLY... 78 1e-14
sp|O13877|RPBX_SCHPO DNA-DIRECTED RNA POLYMERASES I, II, AND III... 77 2e-14
gi|11498730 DNA-directed RNA polymerase, subunit N (rpoN) [Archa... 76 3e-14
gi|6324784 RNA polymerase II subunit; Rpb10p [Saccharomyces cere... 75 7e-14
pir||E64324 DNA-directed RNA polymerase (EC 2.7.7.6) subunit N -... 75 1e-13
sp|Q57649|RPON_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|2... 75 1e-13
sp|Q39290|RPBX_BRANA DNA-DIRECTED RNA POLYMERASE II 8.2 KDA POLY... 73 5e-13
emb|CAB96746.1| (AL365154) DNA-directed RNA polymerase II 8.2 KD... 70 3e-12
sp|Q9YB47|RPON_AERPE DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|7... 69 4e-12
>sp|Q9V194|RPON_PYRAB DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|7514799|pir||A75172
DNA-directed RNA polymerase, chain N (rpon) PAB7131 -
Pyrococcus abyssi (strain Orsay)
>gi|5457966|emb|CAB49456.1| (AJ248284) DNA-directed RNA
polymerase, subunit N (rpoN) [Pyrococcus abyssi]
Length = 65
Score = 141 bits (351), Expect = 1e-33
Identities = 64/65 (98%), Positives = 65/65 (99%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+IVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 HYRVY 65
HYRVY
Sbjct: 61 HYRVY 65
>pir||H71042 probable DNA-directed RNA polymerase subunit N - Pyrococcus
horikoshii >gi|3258061|dbj|BAA30744.1| (AP000006) 119aa
long hypothetical DNA-directed RNA polymerase subunit N
[Pyrococcus horikoshii]
Length = 119
Score = 140 bits (349), Expect = 2e-33
Identities = 63/65 (96%), Positives = 65/65 (99%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
LI+PVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM
Sbjct: 55 LIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 114
Query: 61 HYRVY 65
HY+VY
Sbjct: 115 HYKVY 119
>sp|O59298|RPON_PYRHO DNA-DIRECTED RNA POLYMERASE SUBUNIT N
Length = 65
Score = 139 bits (347), Expect = 3e-33
Identities = 62/65 (95%), Positives = 65/65 (99%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+PVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 HYRVY 65
HY+VY
Sbjct: 61 HYKVY 65
>gb|AAK40429.1| DNA-directed RNA polymerase, subunit N (rpoN) [Sulfolobus
solfataricus]
Length = 66
Score = 98.7 bits (242), Expect = 7e-21
Identities = 39/62 (62%), Positives = 54/62 (86%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+++P+RCFTCG +I DK+ F RV AGE+P KVLDDLG++RYCCRRMLLSHV++I++++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 61 HY 62
HY
Sbjct: 61 HY 62
>sp|P39472|RPON_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|629418|pir||S47027
DNA-directed RNA polymerase (EC 2.7.7.6) chain D -
Sulfolobus acidocaldarius >gi|581580|emb|CAA56484.1|
(X80194) RNA polymerase subunit D [Sulfolobus
acidocaldarius]
Length = 66
Score = 96.7 bits (237), Expect = 3e-20
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+P+RCFTCG V+ DK+ F RV GEDPEKVL +LG+ RYCCRRMLLSHV +I +I+
Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREII 60
Query: 61 HY 62
HY
Sbjct: 61 HY 62
>sp|P29199|RPON_HALMA DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|99177|pir||D41715
DNA-directed RNA polymerase II chain RPB10 homolog -
Haloarcula marismortui >gi|148779|gb|AAA73099.1|
(M76567) OrfMMV [Haloarcula marismortui]
Length = 66
Score = 88.5 bits (216), Expect = 8e-18
Identities = 39/66 (59%), Positives = 52/66 (78%), Gaps = 3/66 (4%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFK---RRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELID 57
++VPVRCFTCG V+G+ + EFK R E EDPEKVLD+LG+ER+CCRRML+SH +L+D
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 58 DIMHYR 63
+ Y+
Sbjct: 61 IVSPYQ 66
>sp|O26147|RPON_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT N (RPB10)
>gi|7447621|pir||A69152 DNA-dependent RNA polymerase,
subunit N - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621076|gb|AAB84548.1| (AE000796)
DNA-dependent RNA polymerase, subunit N
[Methanobacterium thermoautotrophicum]
Length = 55
Score = 81.9 bits (199), Expect = 7e-16
Identities = 34/53 (64%), Positives = 44/53 (82%)
Query: 2 IVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVE 54
++PVRC +CGK + + E++RRV GEDP+ VLDDLGL+RYCCRRML+SHVE
Sbjct: 1 MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna Polymerase
Subunit Rpb10 From Methanobacterium Thermoautotrophicum
Length = 55
Score = 81.5 bits (198), Expect = 1e-15
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 3 VPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVE 54
+PVRC +CGK + + E++RRV GEDP+ VLDDLGL+RYCCRRML+SHVE
Sbjct: 2 IPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>emb|CAC11573.1| (AL445064) DNA-directed RNA polymerase, chain N related protein
[Thermoplasma acidophilum]
Length = 72
Score = 80.4 bits (195), Expect = 2e-15
Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 9/71 (12%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEA----GEDP-----EKVLDDLGLERYCCRRMLLS 51
+I+PVRCF+CG+VI Y + +RV G DP EK+ DDLG+ERYCCRRM++S
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYIKRVNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVS 60
Query: 52 HVELIDDIMHY 62
HV+LI +IM +
Sbjct: 61 HVDLISEIMPF 71
>gb|AAG19524.1| (AE005043) DNA-directed RNA polymerase subunit N; RpoN
[Halobacterium sp. NRC-1]
Length = 66
Score = 79.6 bits (193), Expect = 4e-15
Identities = 34/66 (51%), Positives = 49/66 (73%), Gaps = 3/66 (4%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEA---GEDPEKVLDDLGLERYCCRRMLLSHVELID 57
++VPVRCF+CG V+G+ + FK R E EDP VLDDLG++R+CCRRML++H +L+D
Sbjct: 1 MMVPVRCFSCGTVVGEHWEAFKARAETHDGDEDPADVLDDLGVDRHCCRRMLIAHQDLVD 60
Query: 58 DIMHYR 63
+ Y+
Sbjct: 61 VVSPYQ 66
>gb|AAG37957.1| (AC087079) Hypothetical protein Y37E3.m [Caenorhabditis elegans]
Length = 67
Score = 78.8 bits (191), Expect = 6e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+P+RCFTCGKVIGDK+ + +++ LD LGL RYCCRRMLL+HV+LI+ ++
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 61 HY 62
+Y
Sbjct: 61 NY 62
>sp|Q9VC49|RPBX_DROME DNA-DIRECTED RNA POLYMERASE II 7.6 KDA POLYPEPTIDE (RPB10)
(RPB7.6) >gi|7301195|gb|AAF56326.1| (AE003749) CG13628
gene product [Drosophila melanogaster]
Length = 67
Score = 78.4 bits (190), Expect = 8e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+P+RCFTCGKVIG+K+ + ++A LD LGL+RYCCRRMLL HV+LI+ ++
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 HY 62
+Y
Sbjct: 61 NY 62
>gi|10863925 polymerase (RNA) II (DNA directed) polypeptide L (7.6kD); RNA
polymerase II subunit [Homo sapiens]
>gi|1710660|sp|P52436|RPBX_HUMAN DNA-DIRECTED RNA
POLYMERASE II 7.6 KDA POLYPEPTIDE (RPB10) (RPB7.6)
>gi|1017825|gb|AAA91459.1| (U37690) RNA polymerase II
subunit [Homo sapiens] >gi|1588297|prf||2208312A RNA
polymerase:SUBUNIT=7.6kD [Homo sapiens]
Length = 67
Score = 78.0 bits (189), Expect = 1e-14
Identities = 32/62 (51%), Positives = 48/62 (76%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+PVRCFTCGK++G+K+ + ++A LD LGL+RYCCRRMLL+HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 HY 62
+Y
Sbjct: 61 NY 62
>sp|Q9SYA6|RPBX_ARATH DNA-DIRECTED RNA POLYMERASE II 8.2 KDA POLYPEPTIDE (RPB10) (RP10)
(ABC10) >gi|4508082|gb|AAD21426.1| (AC005882) Putative
RNA polymerase II subunit Rpb10 [Arabidopsis thaliana]
Length = 71
Score = 77.6 bits (188), Expect = 1e-14
Identities = 34/62 (54%), Positives = 47/62 (74%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+IVPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 HY 62
+Y
Sbjct: 61 NY 62
>sp|O13877|RPBX_SCHPO DNA-DIRECTED RNA POLYMERASES I, II, AND III 8.3 KD POLYPEPTIDE
(ABC10-BETA) >gi|7490494|pir||T38031 dna-directed rna
polymerases i, ii, and iii 8.3 kd
polypeptide(abc10-beta).dna-directed rna polymerases i,
ii, and iii 8.3 kd polypeptide(abc10-beta) - fission
yeast (Schizosaccharomyces pombe)
>gi|11279254|pir||T43545 RNA polymerase chain rpb10 -
fission yeast (Schizosaccharomyces pombe)
>gi|2529249|dbj|BAA22805.1| (D89596) RNA polymerase II
subunit Rpb10 [Schizosaccharomyces pombe]
>gi|2529431|gb|AAC49842.1| (U80219) RNA polymerases
I-III common subunit Rpb10 [Schizosaccharomyces pombe]
>gi|2625013|gb|AAC16895.1| (AF027818) RNA polymerases
I, II and III subunit Rpb10 [Schizosaccharomyces pombe]
>gi|2909613|emb|CAB11246.1| (Z98598) dna-directed rna
polymerases i, ii, and iii 8.3 kd
polypeptide(abc10-beta).dna-directed rna polymerases i,
ii, and iii 8.3 kd polypeptide(abc10-beta).
[Schizosaccharomyces pombe]
Length = 71
Score = 77.3 bits (187), Expect = 2e-14
Identities = 31/62 (50%), Positives = 47/62 (75%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+P+RCF+CGKVIGDK+ + ++ + LD LGL+RYCCRRM+L+HV+LI+ ++
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 HY 62
Y
Sbjct: 61 CY 62
>gi|11498730 DNA-directed RNA polymerase, subunit N (rpoN) [Archaeoglobus
fulgidus] >gi|11134392|sp|O29135|RPON_ARCFU
DNA-DIRECTED RNA POLYMERASE SUBUNIT N
>gi|7447622|pir||A69391 DNA-directed RNA polymerase,
subunit N (rpoN) homolog - Archaeoglobus fulgidus
>gi|2649465|gb|AAB90120.1| (AE001026) DNA-directed RNA
polymerase, subunit N (rpoN) [Archaeoglobus fulgidus]
Length = 76
Score = 76.5 bits (185), Expect = 3e-14
Identities = 28/59 (47%), Positives = 45/59 (75%)
Query: 4 PVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
P+RCF+CG VIG Y E+K+++ G+ P++ LD+LG+ERYCCRRM ++H +I ++ +
Sbjct: 13 PIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRF 71
>gi|6324784 RNA polymerase II subunit; Rpb10p [Saccharomyces cerevisiae]
>gi|417696|sp|P22139|RPBX_YEAST DNA-DIRECTED RNA
POLYMERASES I, II, AND III 8.3 KDA POLYPEPTIDE
(ABC10-BETA) (ABC8) >gi|1362277|pir||S48885
DNA-directed RNA polymerase (EC 2.7.7.6) II chain RPB10
- yeast (Saccharomyces cerevisiae)
>gi|295635|gb|AAB59318.1| (L11274) subunit ABC10beta
[Saccharomyces cerevisiae] >gi|385569|gb|AAB27020.1|
(S62098) RNA polymerase II subunit RPB10 [yeast,
Peptide, 70 aa] [Saccharomyces cerevisiae]
>gi|1420491|emb|CAA99425.1| (Z75118) ORF YOR210w
[Saccharomyces cerevisiae]
Length = 70
Score = 75.3 bits (182), Expect = 7e-14
Identities = 33/63 (52%), Positives = 46/63 (72%), Gaps = 1/63 (1%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGE-DPEKVLDDLGLERYCCRRMLLSHVELIDDI 59
+IVPVRCF+CGKV+GDK+ + ++ E D L LGL+RYCCRRM+L+HV+LI+
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 MHY 62
+ Y
Sbjct: 61 LRY 63
>pir||E64324 DNA-directed RNA polymerase (EC 2.7.7.6) subunit N -
Methanococcus jannaschii
Length = 76
Score = 74.5 bits (180), Expect = 1e-13
Identities = 31/66 (46%), Positives = 49/66 (73%), Gaps = 6/66 (9%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSH------VE 54
++ P+RCF+CG VI + + E+K R+ GE+P+ VLDDLG+++YCCRRM +S+ E
Sbjct: 4 MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGRE 63
Query: 55 LIDDIM 60
+ID+I+
Sbjct: 64 IIDEII 69
>sp|Q57649|RPON_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|2826261|gb|AAB98176.1|
(U67475) DNA-directed RNA polymerase, subunit N (rpoN)
[Methanococcus jannaschii]
Length = 73
Score = 74.5 bits (180), Expect = 1e-13
Identities = 31/66 (46%), Positives = 49/66 (73%), Gaps = 6/66 (9%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSH------VE 54
++ P+RCF+CG VI + + E+K R+ GE+P+ VLDDLG+++YCCRRM +S+ E
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGRE 60
Query: 55 LIDDIM 60
+ID+I+
Sbjct: 61 IIDEII 66
>sp|Q39290|RPBX_BRANA DNA-DIRECTED RNA POLYMERASE II 8.2 KDA POLYPEPTIDE (RPB10) (RP10)
(ABC10) >gi|7447619|pir||T07852 probable DNA-directed
RNA polymerase (EC 2.7.7.6) II chain RPB10 - rape
>gi|533690|gb|AAA21279.1| (U12133) RNA polymerase II
subunit RPB10 homolog; similar to yeast RNA polymerase
II subunit RPB10, Swiss-Prot Accession Number P22139
[Brassica napus]
Length = 71
Score = 72.6 bits (175), Expect = 5e-13
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+PVRCFTCGKVIG+K+ + ++ LD L L RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 HY 62
+Y
Sbjct: 61 NY 62
>emb|CAB96746.1| (AL365154) DNA-directed RNA polymerase II 8.2 KDa polypeptide
[Leishmania major]
Length = 89
Score = 69.9 bits (168), Expect = 3e-12
Identities = 29/62 (46%), Positives = 42/62 (66%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
+I+PVRCFTCG VI DKY + V G E ++ LER+CCRRM+L+HV++ D ++
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 61 HY 62
+
Sbjct: 61 KF 62
>sp|Q9YB47|RPON_AERPE DNA-DIRECTED RNA POLYMERASE SUBUNIT N >gi|7521039|pir||B72558
probable DNA-directed RNA polymerase, subunit N APES058
- Aeropyrum pernix (strain K1)
>gi|5105438|dbj|BAA80751.1| (AP000062) 77aa long
hypothetical DNA-directed RNA polymerase, subunit N
[Aeropyrum pernix]
Length = 77
Score = 69.5 bits (167), Expect = 4e-12
Identities = 29/64 (45%), Positives = 43/64 (66%)
Query: 1 LIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
++ PVRCFTCG+ +G + F+ V +G+ P + LD+LG++RYCCRR L + V I+
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 61 HYRV 64
YRV
Sbjct: 61 KYRV 64
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.150 0.478
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25832833
Number of Sequences: 2977
Number of extensions: 844830
Number of successful extensions: 4041
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 22
length of query: 65
length of database: 189,106,746
effective HSP length: 44
effective length of query: 21
effective length of database: 162,773,318
effective search space: 3418239678
effective search space used: 3418239678
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 156 (65.2 bits)