BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7132 (rpoK) DE:DNA-directed RNA polymerase, subunit K (rpoK)
         (57 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75172 DNA-directed RNA polymerase, chain K (rpok) PAB7132 ...   112  5e-25
emb|CAC12285.1| (AL445066) probable DNA-directed RNA polymerase,...    78  9e-15
gi|11498731 DNA-directed RNA polymerase, subunit K (rpoK) [Archa...    76  6e-14

>pir||B75172 DNA-directed RNA polymerase, chain K (rpok) PAB7132 - Pyrococcus
          abyssi (strain Orsay) >gi|5457967|emb|CAB49457.1|
          (AJ248284) DNA-directed RNA polymerase, subunit K
          (rpoK) [Pyrococcus abyssi]
          Length = 57
          
 Score =  112 bits (277), Expect = 5e-25
 Identities = 56/57 (98%), Positives = 57/57 (99%)

Query: 1  VFKYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIRPS 57
          +FKYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIRPS
Sbjct: 1  MFKYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIRPS 57


>emb|CAC12285.1| (AL445066) probable DNA-directed RNA polymerase, chain K (rpok)
          [Thermoplasma acidophilum]
          Length = 61
          
 Score = 78.4 bits (190), Expect = 9e-15
 Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 1/56 (1%)

Query: 3  KYTRFEKARIIGARALQIAMGAPVLIDVPEG-ITPLEAAIMEFEKGVIPITVIRPS 57
          KYT+FEKARIIGARALQIAMGAPV+IDVP+  I P++ A++EFE  VIPIT+ + S
Sbjct: 2  KYTKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKKAS 57


>gi|11498731 DNA-directed RNA polymerase, subunit K (rpoK) [Archaeoglobus
          fulgidus] >gi|3122771|sp|O29134|RPOK_ARCFU DNA-DIRECTED
          RNA POLYMERASE SUBUNIT K >gi|7451051|pir||B69391
          DNA-directed RNA polymerase, subunit K (rpoK) homolog -
          Archaeoglobus fulgidus >gi|2649464|gb|AAB90119.1|
          (AE001026) DNA-directed RNA polymerase, subunit K
          (rpoK) [Archaeoglobus fulgidus]
          Length = 75
          
 Score = 75.7 bits (183), Expect = 6e-14
 Identities = 40/54 (74%), Positives = 45/54 (83%), Gaps = 1/54 (1%)

Query: 2  FKYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
          F+YTRFEKARIIGARALQIAMGAPVLI+  +   PLE A+ EF +GVIPITV R
Sbjct: 9  FEYTRFEKARIIGARALQIAMGAPVLIET-DKTEPLEIALEEFNRGVIPITVRR 61


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.144    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18402532
Number of Sequences: 2977
Number of extensions: 522540
Number of successful extensions: 1748
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 3
length of query: 57
length of database: 189,106,746
effective HSP length: 36
effective length of query: 21
effective length of database: 167,561,214
effective search space: 3518785494
effective search space used: 3518785494
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)