BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7151 (rpoH) DE:DNA-directed RNA polymerase, subunit H (rpoH)
(82 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75181 DNA-directed RNA polymerase, chain H (rpoh) PAB7151 ... 164 1e-40
sp|O74019|RPOH_PYRHO DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|7... 159 6e-39
sp|P31815|RPOH_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|9... 128 1e-29
gi|11499469 DNA-directed RNA polymerase, subunit H (rpoH) [Archa... 82 8e-16
sp|O27122|RPOH_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT H (RPB5... 81 2e-15
gb|AAC28253.1| (AF019248) RNA polymerase I, II and III 24.3 kDa ... 81 2e-15
sp|P11521|RPOH_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT H 80 3e-15
pir||S04715 hypothetical protein 88 - Sulfolobus acidocaldarius ... 80 3e-15
sp|Q9YAT3|RPOH_AERPE DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|7... 78 2e-14
sp|Q58443|RPOH_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|2... 77 3e-14
emb|CAC11533.1| (AL445064) DNA-DIRECTED RNA POLYMERASE CHAIN H r... 77 3e-14
sp|Q03588|RPOH_THEAC DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|2... 77 3e-14
sp|Q09191|RPB5_SCHPO DNA-DIRECTED RNA POLYMERASES II 24 KD POLYP... 75 1e-13
gb|AAF91238.1|AF225206_4 (AF225206) RNA polymerase subunit [Kluy... 73 5e-13
gb|AAC60556.1|S59774_1 (S59774) RNA polymerase subunit [Saccharo... 73 6e-13
gi|6319630 25-kDa RNA polymerase subunit (common to polymerases ... 73 6e-13
gb|AAF39906.1| (AC006665) contains similarity to Pfam familiy PF... 72 1e-12
sp|P41559|RPOH_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|9... 71 1e-12
gb|AAA62401.1| (J04965) RNA polymerase II 23kD subunit [Homo sap... 71 2e-12
sp|P19388|RPB5_HUMAN DNA-DIRECTED RNA POLYMERASE II 23 KD POLYPE... 71 2e-12
gb|AAC03238.1| (AC004151) RPB5_Human [Homo sapiens] 71 2e-12
gi|4505945 polymerase (RNA) II (DNA directed) polypeptide E (25k... 70 4e-12
gb|AAK40569.1| DNA-directed RNA polymerase, subunit H (rpoH) [Su... 68 1e-11
gb|AAF58728.1| (AE003828) CG11979 gene product [Drosophila melan... 68 1e-11
dbj|BAB00074.1| (AB022217) RNA polymerase-like protein [Arabidop... 67 4e-11
>pir||H75181 DNA-directed RNA polymerase, chain H (rpoh) PAB7151 - Pyrococcus
abyssi (strain Orsay) >gi|5458045|emb|CAB49535.1|
(AJ248284) DNA-directed RNA polymerase, subunit H
(rpoH) [Pyrococcus abyssi]
Length = 82
Score = 164 bits (412), Expect = 1e-40
Identities = 81/82 (98%), Positives = 82/82 (99%)
Query: 1 VAGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDI 60
+AGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDI
Sbjct: 1 MAGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDI 60
Query: 61 IEIKRKSPTAGVYYYYRVVVED 82
IEIKRKSPTAGVYYYYRVVVED
Sbjct: 61 IEIKRKSPTAGVYYYYRVVVED 82
>sp|O74019|RPOH_PYRHO DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|7434679|pir||B71032
probable DNA-directed RNA polymerase subunit Hprotein -
Pyrococcus horikoshii >gi|3257975|dbj|BAA30658.1|
(AP000006) 82aa long hypothetical DNA-directed RNA
polymerase subunit Hprotein [Pyrococcus horikoshii]
Length = 82
Score = 159 bits (397), Expect = 6e-39
Identities = 76/82 (92%), Positives = 82/82 (99%)
Query: 1 VAGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDI 60
++GK+EFNIFKHVLVPEHRILSEEEKKALLEKY+ITPAQLPQI+ASDPAVKALGAKPGDI
Sbjct: 1 MSGKNEFNIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDI 60
Query: 61 IEIKRKSPTAGVYYYYRVVVED 82
IEIKR+SPTAGVYYYYRVVVED
Sbjct: 61 IEIKRRSPTAGVYYYYRVVVED 82
>sp|P31815|RPOH_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|99239|pir||S20107
DNA-directed RNA polymerase (EC 2.7.7.6) chain H -
Thermococcus celer >gi|809777|emb|CAA41801.1| (X59077)
DNA-dependent RNA polymerase (subunit H) [Thermococcus
celer] >gi|809778|emb|CAA47721.1| (X67313) Subunit H of
DNA-dependent RNA polymerase [Thermococcus celer]
Length = 82
Score = 128 bits (318), Expect = 1e-29
Identities = 63/82 (76%), Positives = 70/82 (84%)
Query: 1 VAGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDI 60
+A K EF+IF H LVPEHRILSEEE K LL +YRI +QLPQIKASDPAV ALGAKPGD+
Sbjct: 1 MATKKEFDIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDV 60
Query: 61 IEIKRKSPTAGVYYYYRVVVED 82
+EIKRKS TAG YYYYR+VVED
Sbjct: 61 LEIKRKSRTAGYYYYYRLVVED 82
>gi|11499469 DNA-directed RNA polymerase, subunit H (rpoH) [Archaeoglobus
fulgidus] >gi|6685900|sp|O28394|RPOH_ARCFU DNA-DIRECTED
RNA POLYMERASE SUBUNIT H >gi|7434680|pir||D69485
DNA-directed RNA polymerase, subunit H (rpoH) homolog -
Archaeoglobus fulgidus >gi|2648663|gb|AAB89370.1|
(AE000972) DNA-directed RNA polymerase, subunit H
(rpoH) [Archaeoglobus fulgidus]
Length = 76
Score = 82.3 bits (200), Expect = 8e-16
Identities = 40/75 (53%), Positives = 54/75 (71%)
Query: 6 EFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKR 65
+F + H+LVP+H +LS+EE + LL+ I QLP+IKA DP K +GAKPGDI++I R
Sbjct: 2 KFKLQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITR 61
Query: 66 KSPTAGVYYYYRVVV 80
KS TAG +YR+VV
Sbjct: 62 KSLTAGESVFYRLVV 76
>sp|O27122|RPOH_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT H (RPB5)
>gi|7434681|pir||C69006 DNA-dependent RNA polymerase,
subunit H - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|9257044|pdb|1EIK|A Chain A,
Solution Structure Of Rna Polymerase Subunit Rpb5 From
Methanobacterium Thermoautotrophicum
>gi|2622147|gb|AAB85539.1| (AE000876) DNA-dependent RNA
polymerase, subunit H [Methanobacterium
thermoautotrophicum]
Length = 77
Score = 81.1 bits (197), Expect = 2e-15
Identities = 40/71 (56%), Positives = 51/71 (71%)
Query: 9 IFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKSP 68
I KH LVPEH IL+E E K +L++ P QLP+IK +DP KA+GAK GDI++I RKSP
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 69 TAGVYYYYRVV 79
TA + YR+V
Sbjct: 65 TAEEFVTYRLV 75
>gb|AAC28253.1| (AF019248) RNA polymerase I, II and III 24.3 kDa subunit
[Arabidopsis thaliana] >gi|9293866|dbj|BAB01769.1|
(AB022215) RNA polymerase I, II and III 24.3 kDa subunit
[Arabidopsis thaliana]
Length = 205
Score = 81.1 bits (197), Expect = 2e-15
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +HVLVPEH++L+ EEKK LLE+Y + QLP+I+ +DP + G K G +++I R S
Sbjct: 133 NIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPS 192
Query: 68 PTAGVYYYYRVVV 80
TAG Y YR VV
Sbjct: 193 ETAGRYVTYRYVV 205
>sp|P11521|RPOH_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT H
Length = 84
Score = 80.4 bits (195), Expect = 3e-15
Identities = 40/79 (50%), Positives = 52/79 (65%)
Query: 2 AGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDII 61
+ K + +I H LVP+H IL EE L+++ I P QLP I+ASDP K++GAKPGDII
Sbjct: 4 SSKKKIDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDII 63
Query: 62 EIKRKSPTAGVYYYYRVVV 80
+I RKSP G YR V+
Sbjct: 64 KITRKSPFTGESVTYRYVI 82
>pir||S04715 hypothetical protein 88 - Sulfolobus acidocaldarius
>gi|46668|emb|CAA32923.1| (X14818) ORF 88 (AA 1-88)
[Sulfolobus acidocaldarius]
Length = 88
Score = 80.4 bits (195), Expect = 3e-15
Identities = 40/79 (50%), Positives = 52/79 (65%)
Query: 2 AGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDII 61
+ K + +I H LVP+H IL EE L+++ I P QLP I+ASDP K++GAKPGDII
Sbjct: 8 SSKKKIDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDII 67
Query: 62 EIKRKSPTAGVYYYYRVVV 80
+I RKSP G YR V+
Sbjct: 68 KITRKSPFTGESVTYRYVI 86
>sp|Q9YAT3|RPOH_AERPE DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|7521037|pir||D72572
probable DNA-directed RNA polymerase, subunit H APES061
- Aeropyrum pernix (strain K1)
>gi|5105552|dbj|BAA80865.1| (AP000062) 90aa long
hypothetical DNA-directed RNA polymerase, subunit H
[Aeropyrum pernix]
Length = 90
Score = 77.6 bits (188), Expect = 2e-14
Identities = 42/77 (54%), Positives = 50/77 (64%)
Query: 4 KSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEI 63
KS I +H VPEHR+LS EE +L+ I P QLP+I +DP + L AKPGDIIEI
Sbjct: 7 KSSRVILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIARLLKAKPGDIIEI 66
Query: 64 KRKSPTAGVYYYYRVVV 80
R+S TAG YYR VV
Sbjct: 67 TRRSYTAGEAKYYRFVV 83
>sp|Q58443|RPOH_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|2127870|pir||F64429
DNA-directed RNA polymerase (EC 2.7.7.6) subunit H -
Methanococcus jannaschii >gi|4930045|pdb|1HMJ|A Chain
A, Solution Structure Of Rna Polymerase Subunit H
>gi|1591692|gb|AAB99042.1| (U67546) DNA-directed RNA
polymerase, subunit H (rpoH) [Methanococcus jannaschii]
Length = 78
Score = 77.3 bits (187), Expect = 3e-14
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 12 HVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKSPTAG 71
H+LVP+H I+ +EE + +L++Y I QLP+I DP ++ +GAK GD++ + RKSPTAG
Sbjct: 6 HILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAG 65
Query: 72 VYYYYRVVVE 81
V YR+V++
Sbjct: 66 VSIAYRLVIK 75
>emb|CAC11533.1| (AL445064) DNA-DIRECTED RNA POLYMERASE CHAIN H related protein
[Thermoplasma acidophilum]
Length = 91
Score = 77.3 bits (187), Expect = 3e-14
Identities = 42/87 (48%), Positives = 55/87 (62%), Gaps = 5/87 (5%)
Query: 1 VAGKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGA----- 55
V ++FN+ H LVPEH I+ EEE+K +L++ I LP+I +DPA+KAL A
Sbjct: 2 VVKMAKFNVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKI 61
Query: 56 KPGDIIEIKRKSPTAGVYYYYRVVVED 82
K G II+I RKSPT G YYRVV +
Sbjct: 62 KEGTIIKIVRKSPTMGHSVYYRVVASE 88
>sp|Q03588|RPOH_THEAC DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|280359|pir||S26721
DNA-directed RNA polymerase (EC 2.7.7.6) chain H -
Thermoplasma acidophilum >gi|48090|emb|CAA48279.1|
(X68198) DNA-directed RNA polymerase [Thermoplasma
acidophilum]
Length = 87
Score = 76.9 bits (186), Expect = 3e-14
Identities = 41/83 (49%), Positives = 54/83 (64%), Gaps = 5/83 (6%)
Query: 5 SEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGA-----KPGD 59
++FN+ H LVPEH I+ EEE+K +L++ I LP+I +DPA+KAL A K G
Sbjct: 2 AKFNVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGT 61
Query: 60 IIEIKRKSPTAGVYYYYRVVVED 82
II+I RKSPT G YYRVV +
Sbjct: 62 IIKIVRKSPTMGHSVYYRVVASE 84
>sp|Q09191|RPB5_SCHPO DNA-DIRECTED RNA POLYMERASES II 24 KD POLYPEPTIDE (RNA POLYMERASE
II SUBUNIT 5) >gi|7490495|pir||T38270 DNA-directed RNA
polymerases II 24K polypeptide - fission yeast
(Schizosaccharomyces pombe) >gi|1345439|dbj|BAA07843.1|
(D43785) RNA polymerase II 5th largest subunit
[Schizosaccharomyces pombe] >gi|2465157|emb|CAB16886.1|
(Z99753) dna-directed rna polymerase i ii and iii 24 kd
polypeptide [Schizosaccharomyces pombe]
>gi|2708526|gb|AAB92515.1| (AF027820) Rpb5
[Schizosaccharomyces pombe]
Length = 210
Score = 74.9 bits (181), Expect = 1e-13
Identities = 33/71 (46%), Positives = 51/71 (71%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI H LVP+H +LS +EKK LL++Y++ QLP+I+ +DP + LG K G++++I R+S
Sbjct: 138 NITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRS 197
Query: 68 PTAGVYYYYRV 78
T+G Y YR+
Sbjct: 198 ETSGRYNSYRI 208
>gb|AAF91238.1|AF225206_4 (AF225206) RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 73.0 bits (176), Expect = 5e-13
Identities = 36/71 (50%), Positives = 49/71 (68%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI H LVP+H LS+ EKK LL++YR+ +QLP+I+ DP LG K G++I+I RKS
Sbjct: 143 NITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKS 202
Query: 68 PTAGVYYYYRV 78
T+G Y YR+
Sbjct: 203 ETSGRYASYRI 213
>gb|AAC60556.1|S59774_1 (S59774) RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 72.6 bits (175), Expect = 6e-13
Identities = 34/71 (47%), Positives = 50/71 (69%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI H LVP+H LS +EK+ LL++YR+ +QLP+I+ +DP LG K G++++I RKS
Sbjct: 143 NITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKS 202
Query: 68 PTAGVYYYYRV 78
T+G Y YR+
Sbjct: 203 ETSGRYASYRI 213
>gi|6319630 25-kDa RNA polymerase subunit (common to polymerases I, II and
III); Rpb5p [Saccharomyces cerevisiae]
>gi|133338|sp|P20434|RPB5_YEAST DNA-DIRECTED RNA
POLYMERASES I, II, AND III 27 KD POLYPEPTIDE (ABC27)
>gi|101299|pir||A34588 DNA-directed RNA polymerase (EC
2.7.7.6) chain RPB5 - yeast (Saccharomyces cerevisiae)
>gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
>gi|287822|emb|CAA37381.1| (X53287) RNA polymerase RPB5
subunit [Saccharomyces cerevisiae]
>gi|396754|emb|CAA50472.1| (X71329) DNA-directed RNA
polymerase [Saccharomyces cerevisiae]
>gi|536484|emb|CAA85113.1| (Z36023) ORF YBR154c
[Saccharomyces cerevisiae]
Length = 215
Score = 72.6 bits (175), Expect = 6e-13
Identities = 34/71 (47%), Positives = 50/71 (69%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI H LVP+H LS +EK+ LL++YR+ +QLP+I+ +DP LG K G++++I RKS
Sbjct: 143 NITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKS 202
Query: 68 PTAGVYYYYRV 78
T+G Y YR+
Sbjct: 203 ETSGRYASYRI 213
>gb|AAF39906.1| (AC006665) contains similarity to Pfam familiy PF01191 (RNA
polymerases H / 23 Kd subunit), score=163.3, E=4.1e-45,
N=1 [Caenorhabditis elegans]
Length = 211
Score = 71.8 bits (173), Expect = 1e-12
Identities = 33/73 (45%), Positives = 49/73 (66%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +H LVPEH +++ EEK LL +Y++ +QLP+I+ DP + G + G +++I R S
Sbjct: 139 NITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPS 198
Query: 68 PTAGVYYYYRVVV 80
TAG Y YR+VV
Sbjct: 199 ETAGRYITYRLVV 211
>sp|P41559|RPOH_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT H >gi|99133|pir||S23795
DNA-directed RNA polymerase (EC 2.7.7.6) chain H -
Methanococcus vannielii >gi|581387|emb|CAA51725.1|
(X73293) DNA-directed RNA polymerase [Methanococcus
vannielii] >gi|809732|emb|CAA41862.1| (X59151) subunit
H of DNA-dependent RNA polymerase [Methanococcus
vannielii]
Length = 78
Score = 71.4 bits (172), Expect = 1e-12
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 9 IFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKSP 68
+ H +VPEH I+ +E LLEKY I Q P++ SDP V +GAK GDI++I RKS
Sbjct: 3 VSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRKSQ 62
Query: 69 TAGVYYYYRVVVED 82
TAG Y+R+VV +
Sbjct: 63 TAGETVYFRLVVSN 76
>gb|AAA62401.1| (J04965) RNA polymerase II 23kD subunit [Homo sapiens]
Length = 210
Score = 70.6 bits (170), Expect = 2e-12
Identities = 33/72 (45%), Positives = 48/72 (65%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +H LVPEH ++++EE LL +Y++ QLP+I+A DP + G K G +++I R S
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPS 197
Query: 68 PTAGVYYYYRVV 79
TAG Y YR+V
Sbjct: 198 ETAGRYITYRLV 209
>sp|P19388|RPB5_HUMAN DNA-DIRECTED RNA POLYMERASE II 23 KD POLYPEPTIDE (RPB25) (XAP4)
(RPB5)
Length = 210
Score = 70.6 bits (170), Expect = 2e-12
Identities = 33/72 (45%), Positives = 48/72 (65%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +H LVPEH ++++EE LL +Y++ QLP+I+A DP + G K G +++I R S
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPS 197
Query: 68 PTAGVYYYYRVV 79
TAG Y YR+V
Sbjct: 198 ETAGRYITYRLV 209
>gb|AAC03238.1| (AC004151) RPB5_Human [Homo sapiens]
Length = 210
Score = 70.6 bits (170), Expect = 2e-12
Identities = 33/72 (45%), Positives = 48/72 (65%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +H LVPEH ++++EE LL +Y++ QLP+I+A DP + G K G +++I R S
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPS 197
Query: 68 PTAGVYYYYRVV 79
TAG Y YR+V
Sbjct: 198 ETAGRYITYRLV 209
>gi|4505945 polymerase (RNA) II (DNA directed) polypeptide E (25kD) [Homo
sapiens] >gi|2135016|pir||A32618 DNA-directed RNA
polymerase (EC 2.7.7.6) II 23K chain [validated] - human
>gi|1060912|dbj|BAA07406.1| (D38251) RPB5 [Homo sapiens]
Length = 210
Score = 69.9 bits (168), Expect = 4e-12
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +H LVPEH ++++EE LL +Y++ QLP+I+A DP + G + G +++I R S
Sbjct: 138 NITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYFGIRRGQVVKIIRPS 197
Query: 68 PTAGVYYYYRVV 79
TAG Y YR+V
Sbjct: 198 ETAGRYITYRLV 209
>gb|AAK40569.1| DNA-directed RNA polymerase, subunit H (rpoH) [Sulfolobus
solfataricus]
Length = 84
Score = 68.3 bits (164), Expect = 1e-11
Identities = 33/69 (47%), Positives = 45/69 (64%)
Query: 12 HVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKSPTAG 71
H LVP+H +L+ +E +L++ I P QLP I+ASDP +++ AKPGDII I RKS G
Sbjct: 14 HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 72 VYYYYRVVV 80
YR V+
Sbjct: 74 EVVSYRYVI 82
>gb|AAF58728.1| (AE003828) CG11979 gene product [Drosophila melanogaster]
Length = 210
Score = 68.3 bits (164), Expect = 1e-11
Identities = 32/72 (44%), Positives = 47/72 (64%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
NI +H LVPEH +++ EEK+ LL +Y++ L +I+A DP + G K G +++I R S
Sbjct: 138 NITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSS 197
Query: 68 PTAGVYYYYRVV 79
TAG Y YR+V
Sbjct: 198 ETAGRYISYRLV 209
>dbj|BAB00074.1| (AB022217) RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 66.7 bits (160), Expect = 4e-11
Identities = 31/73 (42%), Positives = 46/73 (62%)
Query: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
N+ +HV VPEH+ L+ EEK+ LE+ R LP+I +DP + G K G++++I R S
Sbjct: 106 NVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRIHVTDPIARYFGLKRGEVVKISRLS 165
Query: 68 PTAGVYYYYRVVV 80
T+G Y YR V+
Sbjct: 166 ETSGRYITYRYVI 178
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.136 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31820181
Number of Sequences: 2977
Number of extensions: 1087197
Number of successful extensions: 3406
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3378
Number of HSP's gapped (non-prelim): 26
length of query: 82
length of database: 189,106,746
effective HSP length: 53
effective length of query: 29
effective length of database: 157,386,935
effective search space: 4564221115
effective search space used: 4564221115
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 157 (65.6 bits)