BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7152 (rpl30E) DE:LSU ribosomal protein L30E (rpl30E)
(99 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75182 lsu ribosomal protein l30e (rpl30e) PAB7152 - Pyroco... 192 6e-49
sp|O74018|RL3E_PYRHO 50S RIBOSOMAL PROTEIN L30E >gi|7441095|pir|... 189 8e-48
sp|P29160|RL3E_THECE 50S RIBOSOMAL PROTEIN L30E >gi|99242|pir||S... 141 2e-33
sp|O27127|RL3E_METTH 50S RIBOSOMAL PROTEIN L30E >gi|7441096|pir|... 112 8e-25
sp|P54061|RL3E_METJA 50S RIBOSOMAL PROTEIN L30E >gi|2144781|pir|... 106 5e-23
sp|P14025|RL3E_METVA 50S RIBOSOMAL PROTEIN L30E >gi|71345|pir||R... 100 4e-21
sp|P11522|RL3E_SULAC 50S RIBOSOMAL PROTEIN L30E (ORF 104) >gi|81... 99 8e-21
gb|AAK40564.1| LSU ribosomal protein L30E (rpl30E) [Sulfolobus s... 98 2e-20
gi|4506631 ribosomal protein L30 [Homo sapiens] >gi|6677783|ref|... 81 3e-15
sp|P47833|RL30_CHICK 60S RIBOSOMAL PROTEIN L30 >gi|422700|pir||S... 81 3e-15
pir||T37557 60s ribosomal protein l30 - fission yeast (Schizosa... 79 1e-14
sp|Q9YAU3|RL3E_AERPE 50S RIBOSOMAL PROTEIN L30E >gi|7441098|pir|... 78 3e-14
gb|AAF53738.1| (AE003661) CG10652 gene product [Drosophila melan... 78 3e-14
sp|P52808|RL30_SCHPO 60S RIBOSOMAL PROTEIN L30 (L32) >gi|7490033... 76 7e-14
dbj|BAA88178.1| (AP000836) ESTs AU081342(E50565),C98255(C1338), ... 76 9e-14
sp|O48558|RL30_MAIZE 60S RIBOSOMAL PROTEIN L30 >gi|7441094|pir||... 76 9e-14
pir||T26428 hypothetical protein Y106G6H.3 - Caenorhabditis eleg... 74 3e-13
sp|P38664|RL30_KLULA 60S RIBOSOMAL PROTEIN L30 (L32) 73 1e-12
sp|O49884|RL30_LUPLU 60S RIBOSOMAL PROTEIN L30 >gi|2879811|emb|C... 71 2e-12
gi|6321408 Large ribosomal subunit protein L30 (L32) (rp73) (YL3... 71 3e-12
pdb|1CK5|B Chain B, Ribosomal Protein L30-Mrna Complex From Yeas... 71 3e-12
dbj|BAB01800.1| (AB026654) 60S ribosomal protein L30-like [Arabi... 70 5e-12
sp|P39095|RL30_LEIMA 60S RIBOSOMAL PROTEIN L30 >gi|630443|pir||S... 69 8e-12
gb|AAF34766.1|AF227621_1 (AF227621) 60S ribosomal protein L30 [E... 68 2e-11
sp|P49153|RL30_TRYBB 60S RIBOSOMAL PROTEIN L30 >gi|1015933|emb|C... 68 2e-11
gb|AAG21435.1|AC008054_6 (AC008054) L30-like Ribosomal protein [... 67 4e-11
gb|AAG21599.1|AC025781_7 (AC025781) 60S ribosomal protein L30, p... 67 4e-11
gi|11499474 LSU ribosomal protein L30E (rpl30E) [Archaeoglobus f... 67 6e-11
>pir||D75182 lsu ribosomal protein l30e (rpl30e) PAB7152 - Pyrococcus abyssi
(strain Orsay) >gi|5458049|emb|CAB49539.1| (AJ248284)
LSU ribosomal protein L30E (rpl30E) [Pyrococcus abyssi]
Length = 99
Score = 192 bits (484), Expect = 6e-49
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV
Sbjct: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
Query: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALAKR 99
YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALAKR
Sbjct: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALAKR 99
>sp|O74018|RL3E_PYRHO 50S RIBOSOMAL PROTEIN L30E >gi|7441095|pir||F71031 probable
ribosomal protein L30 - Pyrococcus horikoshii
>gi|3257971|dbj|BAA30654.1| (AP000006) 99aa long
hypothetical 50S ribosomal protein L30 [Pyrococcus
horikoshii]
Length = 99
Score = 189 bits (474), Expect = 8e-48
Identities = 96/99 (96%), Positives = 98/99 (98%)
Query: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
MDLAFEL+KALETGKVILGSNETIRLAKTGGAKLIIVA+NAPKEIKDDIYYYAKLSDIPV
Sbjct: 1 MDLAFELKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPV 60
Query: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALAKR 99
YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILAL KR
Sbjct: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALVKR 99
>sp|P29160|RL3E_THECE 50S RIBOSOMAL PROTEIN L30E >gi|99242|pir||S18711 ribosomal
protein L30.eR - Thermococcus celer
>gi|48143|emb|CAA47725.1| (X67313) ribosomal protein 30
[Thermococcus celer] >gi|58410|emb|CAA42847.1| (X60305)
ribosomal protein L30 [Thermococcus celer]
Length = 101
Score = 141 bits (352), Expect = 2e-33
Identities = 68/96 (70%), Positives = 85/96 (87%)
Query: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
+D AFELRKA +TGK+++G+ ++I+ AK GGAKLIIVA+NA +IK+DI YYA+LS IPV
Sbjct: 2 VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPV 61
Query: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILAL 96
YEFEGTSVELGTLLG+P V++LA+VDPGESRILAL
Sbjct: 62 YEFEGTSVELGTLLGRPHTVSALAVVDPGESRILAL 97
>sp|O27127|RL3E_METTH 50S RIBOSOMAL PROTEIN L30E >gi|7441096|pir||A69007 ribosomal
protein L30 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622152|gb|AAB85544.1| (AE000876)
ribosomal protein L30 [Methanobacterium
thermoautotrophicum]
Length = 98
Score = 112 bits (278), Expect = 8e-25
Identities = 54/96 (56%), Positives = 72/96 (74%)
Query: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
MD+ +R A++TG VILGS TI+ K G KL+++A N P+++K+DI YYAKLS+IPV
Sbjct: 1 MDIDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPV 60
Query: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILAL 96
Y EGTSVELG++ GKPF V +L I DPG+S IL +
Sbjct: 61 YTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILEM 96
>sp|P54061|RL3E_METJA 50S RIBOSOMAL PROTEIN L30E >gi|2144781|pir||C64430 ribosomal
protein L30.eR - Methanococcus jannaschii
>gi|1591698|gb|AAB99048.1| (U67547) LSU ribosomal
protein L30E [Methanococcus jannaschii]
Length = 110
Score = 106 bits (263), Expect = 5e-23
Identities = 50/99 (50%), Positives = 74/99 (74%)
Query: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
MD+ +R A++TGKVILGS TI+ K G KL+++A N PK++++D+ YYAKLS+IPV
Sbjct: 7 MDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPV 66
Query: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRILALAKR 99
Y+ + TS+ELG + GKPF VA+L ++D G S I+ L ++
Sbjct: 67 YQHKITSLELGAVCGKPFPVAALLVLDEGLSNIMELVEK 105
>sp|P14025|RL3E_METVA 50S RIBOSOMAL PROTEIN L30E >gi|71345|pir||R6MXER ribosomal protein
L30.eR - Methanococcus vannielii
>gi|44782|emb|CAA34087.1| (X15970) ORF 1 protein (AA
1-105) [Methanococcus vannielii]
Length = 105
Score = 100 bits (247), Expect = 4e-21
Identities = 45/94 (47%), Positives = 68/94 (71%)
Query: 1 MDLAFELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV 60
MD+ +R A++TG V+LG+ + I+ K G KL+I+A N K++K+DI+YY KLS+ PV
Sbjct: 7 MDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPV 66
Query: 61 YEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94
Y + TS+ELG + GKPF V++L +++PG S IL
Sbjct: 67 YTHQVTSIELGAICGKPFPVSALLVLEPGNSAIL 100
>sp|P11522|RL3E_SULAC 50S RIBOSOMAL PROTEIN L30E (ORF 104) >gi|81112|pir||S04719
ribosomal protein L30.eR - Sulfolobus sp. (strain 7)
>gi|46672|emb|CAA32927.1| (X14818) ORF 104 (AA 1-104)
[Sulfolobus acidocaldarius]
Length = 104
Score = 99.5 bits (244), Expect = 8e-21
Identities = 46/93 (49%), Positives = 68/93 (72%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
EL+ L +GKVILG+ +T++L KTG K ++V+ +++KDDI ++K SDIP+Y ++G
Sbjct: 8 ELKTLLRSGKVILGTRKTLKLLKTGKVKGVVVSSTLRQDLKDDIMTFSKFSDIPIYLYKG 67
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRILALAK 98
+ ELGTL GKPF+V+ + IVD GES+IL K
Sbjct: 68 SGYELGTLCGKPFMVSVIGIVDEGESKILEFIK 100
>gb|AAK40564.1| LSU ribosomal protein L30E (rpl30E) [Sulfolobus solfataricus]
Length = 108
Score = 97.9 bits (240), Expect = 2e-20
Identities = 44/93 (47%), Positives = 68/93 (72%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
EL+ L+TGKVI G+ I+ K K++IVA ++K DI +YAKLS+IPVYE++G
Sbjct: 14 ELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKG 73
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRILALAK 98
+ +LGTL GKPF++++++I+D G+S+IL + K
Sbjct: 74 SGWDLGTLCGKPFMISTISIIDEGDSKILDIIK 106
>gi|4506631 ribosomal protein L30 [Homo sapiens] >gi|6677783|ref|NP_033109.1|
ribosomal protein L30 [Mus musculus]
>gi|11424932|ref|XP_005172.1| ribosomal protein L30
[Homo sapiens] >gi|132876|sp|P04645|RL30_HUMAN 60S
RIBOSOMAL PROTEIN L30 >gi|71342|pir||R6RT30 ribosomal
protein L30, cytosolic [validated] - rat
>gi|71343|pir||R6MS30 ribosomal protein L30 - mouse
>gi|631363|pir||S45004 ribosomal protein L30, cytosolic
- human >gi|200777|gb|AAA03645.1| (K02928) ribosomal
protein L30 [Mus musculus] >gi|206728|gb|AAA42072.1|
(K02932) ribosomal protein L30 [Rattus norvegicus]
>gi|488415|emb|CAA55820.1| (X79238) ribosomal protein
L30 [Homo sapiens] >gi|3115336|gb|AAC15858.1| (L05095)
ribosomal protein L30 [Homo sapiens]
Length = 115
Score = 81.1 bits (197), Expect = 3e-15
Identities = 37/88 (42%), Positives = 60/88 (68%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L+ +++GK +LG +T+++ + G AKL+I+A N P K +I YYA L+ V+ + G
Sbjct: 18 LQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
++ELGT GK + V +LAI+DPG+S I+
Sbjct: 78 NIELGTACGKYYRVCTLAIIDPGDSDII 105
>sp|P47833|RL30_CHICK 60S RIBOSOMAL PROTEIN L30 >gi|422700|pir||S34608 ribosomal protein
L30, cytosolic - chicken >gi|402507|dbj|BAA03394.1|
(D14521) ribosomal protein L30 [Gallus gallus]
>gi|10442706|gb|AAG17442.1|AF297033_1 (AF297033)
ribosomal protein L30 [Ophiophagus hannah]
Length = 115
Score = 81.1 bits (197), Expect = 3e-15
Identities = 37/88 (42%), Positives = 60/88 (68%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L+ +++GK +LG +T+++ + G AKL+I+A N P K +I YYA L+ V+ + G
Sbjct: 18 LQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
++ELGT GK + V +LAI+DPG+S I+
Sbjct: 78 NIELGTACGKYYRVCTLAIIDPGDSDII 105
>pir||T37557 60s ribosomal protein l30 - fission yeast (Schizosaccharomyces
pombe) >gi|5830484|emb|CAB54828.1| (AL110509) 60s
ribosomal protein l30 [Schizosaccharomyces pombe]
Length = 117
Score = 79.2 bits (192), Expect = 1e-14
Identities = 38/90 (42%), Positives = 59/90 (65%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L +++GK +LG T++ ++G AKLI++A NAP K ++ YYA LS V+ + G
Sbjct: 27 KLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSG 86
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRILA 95
+++LGT GK F V LA++D G+S ILA
Sbjct: 87 NNIDLGTACGKLFRVGVLAVIDAGDSDILA 116
>sp|Q9YAU3|RL3E_AERPE 50S RIBOSOMAL PROTEIN L30E >gi|7441098|pir||B72571 probable
ribosomal protein L30 APE1851 - Aeropyrum pernix
(strain K1) >gi|5105542|dbj|BAA80855.1| (AP000062) 102aa
long hypothetical 50S ribosomal protein L30 [Aeropyrum
pernix]
Length = 102
Score = 77.6 bits (188), Expect = 3e-14
Identities = 34/92 (36%), Positives = 61/92 (65%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L+ ++TG +G ++++ K G AK I++A+N P E++ + YYAKL+ IP+ + GT
Sbjct: 9 LKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGT 68
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRILALAK 98
+++G ++G+ V+ LA++D G SRIL A+
Sbjct: 69 RMDMGLVMGRRHGVSVLAVIDEGSSRILEQAE 100
>gb|AAF53738.1| (AE003661) CG10652 gene product [Drosophila melanogaster]
Length = 111
Score = 77.6 bits (188), Expect = 3e-14
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L +++GK LG +T++ + G AKL+++A N P K +I YYA L+ V + GT
Sbjct: 18 LALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYSGT 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
++ELGT GK F V +L+I DPG+S I+
Sbjct: 78 NIELGTACGKYFRVCTLSITDPGDSDII 105
>sp|P52808|RL30_SCHPO 60S RIBOSOMAL PROTEIN L30 (L32) >gi|7490033|pir||T39226 60s
ribosomal protein L30 - fission yeast
(Schizosaccharomyces pombe) >gi|1621046|gb|AAB17132.1|
(U52080) ribosomal protein Rpl32p [Schizosaccharomyces
pombe] >gi|2440209|emb|CAB11499.1| (Z98763) 60s
ribosomal protein L30/L30A [Schizosaccharomyces pombe]
Length = 109
Score = 76.5 bits (185), Expect = 7e-14
Identities = 38/89 (42%), Positives = 57/89 (63%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L +++GK +LG T++ ++G AKLI++A N P K ++ YYA LS V+ + G
Sbjct: 19 KLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAG 78
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRIL 94
T+++LGT GK F V LAI D G+S IL
Sbjct: 79 TNIDLGTACGKLFRVGVLAITDAGDSDIL 107
>dbj|BAA88178.1| (AP000836) ESTs AU081342(E50565),C98255(C1338), AU058346(E50565)
correspond to a region of the predicted gene.~Similar to
ribosomal protein L30 (AF034949) [Oryza sativa]
Length = 111
Score = 76.1 bits (184), Expect = 9e-14
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L+ +++GK LG +R + AKL+I++ N P K +I YYA L+ + V+ F G
Sbjct: 17 KLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHG 76
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRIL 94
+V+LGT GK F V L+I+DPG+S I+
Sbjct: 77 NNVDLGTACGKYFRVCCLSIIDPGDSDII 105
>sp|O48558|RL30_MAIZE 60S RIBOSOMAL PROTEIN L30 >gi|7441094|pir||T01411 ribosomal protein
L30 - maize >gi|2668750|gb|AAB88620.1| (AF034949)
ribosomal protein L30 [Zea mays]
Length = 112
Score = 76.1 bits (184), Expect = 9e-14
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L+ +++GK LG +R + +KL+I+A N P K +I YYA L+ + V+ F G
Sbjct: 17 KLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHG 76
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRIL 94
+V+LGT GK F V L+I+DPG+S I+
Sbjct: 77 NNVDLGTACGKYFRVCCLSIIDPGDSDII 105
>pir||T26428 hypothetical protein Y106G6H.3 - Caenorhabditis elegans
>gi|3880682|emb|CAA21573.1| (AL032631) predicted using
Genefinder~cDNA EST EMBL:T02064 comes from this
gene~cDNA EST yk163d12.5 comes from this gene~cDNA EST
yk252h6.3 comes from this gene~cDNA EST yk393b10.3 comes
from this gene~cDNA EST yk403h3.3 comes from this
gene~cDNA EST y>
Length = 113
Score = 74.1 bits (179), Expect = 3e-13
Identities = 35/88 (39%), Positives = 55/88 (61%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L ++TG+ +LG +T++ G AKL+I+A N P K +I YYA L+ V+ + G
Sbjct: 18 LSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
++ELGT G+ F V +LA+ D G+S I+
Sbjct: 78 NIELGTACGRLFRVCTLAVTDAGDSDII 105
>sp|P38664|RL30_KLULA 60S RIBOSOMAL PROTEIN L30 (L32)
Length = 105
Score = 72.6 bits (175), Expect = 1e-12
Identities = 39/89 (43%), Positives = 55/89 (60%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L +++GK LG T++ + G AKLII+A N P K ++ YYA LS VY F+G
Sbjct: 13 KLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQG 72
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRIL 94
+ ELGT +GK F V + I+D G+S IL
Sbjct: 73 GNNELGTAVGKLFRVGVVTILDAGDSDIL 101
>sp|O49884|RL30_LUPLU 60S RIBOSOMAL PROTEIN L30 >gi|2879811|emb|CAA11256.1| (AJ223316)
ribosomal protein L30 [Lupinus luteus]
Length = 112
Score = 71.4 bits (172), Expect = 2e-12
Identities = 35/88 (39%), Positives = 54/88 (60%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L +++GK LG ++ ++ KLII+A N P K +I YYA L+ + V+ + G
Sbjct: 18 LALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
+V+LGT GK + V L+IVDPG+S I+
Sbjct: 78 NVDLGTACGKYYRVCCLSIVDPGDSDII 105
>gi|6321408 Large ribosomal subunit protein L30 (L32) (rp73) (YL38); Rpl30p
[Saccharomyces cerevisiae]
>gi|132948|sp|P14120|RL30_YEAST 60S RIBOSOMAL PROTEIN
L30 (YL32) (RP73) >gi|71344|pir||R6BY30 ribosomal
protein L30.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|172488|gb|AAA35005.1| (J03457) ribosomal
protein L32 [Saccharomyces cerevisiae]
>gi|1322504|emb|CAA96731.1| (Z72552) ORF YGL030w
[Saccharomyces cerevisiae]
Length = 105
Score = 71.0 bits (171), Expect = 3e-12
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L +++GK LG T++ + G +KLII+A N P K ++ YYA LS VY F+G
Sbjct: 13 KLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQG 72
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRIL 94
+ ELGT +GK F V ++I++ G+S IL
Sbjct: 73 GNNELGTAVGKLFRVGVVSILEAGDSDIL 101
>pdb|1CK5|B Chain B, Ribosomal Protein L30-Mrna Complex From Yeast
>gi|6730177|pdb|1CK8|B Chain B, Rpl30-Mrna Complex From
Yeast >gi|6573463|pdb|1CN8|A Chain A, Ribosomal Protein
L30-Mrna Complex From Yeast >gi|6573465|pdb|1CN9|A Chain
A, Rpl30-Mrna Complex >gi|6435677|pdb|1CK2|A Chain A,
Yeast (Saccharomyces Cerevisiae) Ribosomal Protein L30
>gi|6435678|pdb|1CK9|A Chain A, Solution Structure Of
Yeast Ribosomal Protein L30 >gi|6435679|pdb|1CN7|A Chain
A, Yeast Ribosomal Protein L30
Length = 104
Score = 71.0 bits (171), Expect = 3e-12
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L +++GK LG T++ + G +KLII+A N P K ++ YYA LS VY F+G
Sbjct: 12 KLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQG 71
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRIL 94
+ ELGT +GK F V ++I++ G+S IL
Sbjct: 72 GNNELGTAVGKLFRVGVVSILEAGDSDIL 100
>dbj|BAB01800.1| (AB026654) 60S ribosomal protein L30-like [Arabidopsis thaliana]
Length = 112
Score = 70.2 bits (169), Expect = 5e-12
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L +++GK LG ++ ++ KLI+++ N P + +I YYA L+ + V+ + G
Sbjct: 18 LALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
+V+LGT GK F V+ L+IVDPG+S I+
Sbjct: 78 NVDLGTACGKYFRVSCLSIVDPGDSDII 105
>sp|P39095|RL30_LEIMA 60S RIBOSOMAL PROTEIN L30 >gi|630443|pir||S44134 ribosomal protein
L30.e - Leishmania major >gi|473027|emb|CAA82249.1|
(Z28408) L30-like ribosomal protein [Leishmania major]
Length = 104
Score = 69.5 bits (167), Expect = 8e-12
Identities = 28/88 (31%), Positives = 55/88 (61%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L+ +++GK +LG+ + + + G +KL+++A N P + ++ YY LS P++ + G
Sbjct: 15 KLQLVMKSGKYVLGTQQALTTLRQGRSKLVVIANNCPPIRRAEVEYYCTLSKTPIHHYSG 74
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRI 93
+++LGT GKPF L++ + G+S I
Sbjct: 75 NNLDLGTACGKPFRTCVLSVTNVGDSDI 102
>gb|AAF34766.1|AF227621_1 (AF227621) 60S ribosomal protein L30 [Euphorbia esula]
Length = 112
Score = 68.3 bits (164), Expect = 2e-11
Identities = 34/88 (38%), Positives = 52/88 (58%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L +++GK LG + ++ KLII+A N P K +I YYA L+ + V+ + G
Sbjct: 18 LALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
+V+LGT GK F V L+I+D G+S I+
Sbjct: 78 NVDLGTACGKYFRVCCLSIIDAGDSDII 105
>sp|P49153|RL30_TRYBB 60S RIBOSOMAL PROTEIN L30 >gi|1015933|emb|CAA91139.1| (Z54338)
ribosomal protein L30 [Trypanosoma brucei]
>gi|1015935|emb|CAA91140.1| (Z54339) ribosomal protein
L30 [Trypanosoma brucei]
Length = 105
Score = 67.9 bits (163), Expect = 2e-11
Identities = 28/88 (31%), Positives = 56/88 (62%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+++ +++GK +LG+ ++++ + G +KL++++ N P K +I YY LS P++ + G
Sbjct: 15 KIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPIHHYSG 74
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRI 93
+++LGT G+ F L+I D G+S I
Sbjct: 75 NNLDLGTACGRHFRACVLSITDVGDSDI 102
>gb|AAG21435.1|AC008054_6 (AC008054) L30-like Ribosomal protein [Leishmania major]
Length = 121
Score = 67.1 bits (161), Expect = 4e-11
Identities = 28/90 (31%), Positives = 55/90 (61%)
Query: 6 ELRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEG 65
+L+ +++GK +LG+ + + + G +KL+++A N P + ++ YY LS P++ + G
Sbjct: 32 KLQLVMKSGKYVLGTQQALTTLRQGRSKLVVIANNCPPIRRAEVEYYCTLSKTPIHHYSG 91
Query: 66 TSVELGTLLGKPFVVASLAIVDPGESRILA 95
+++LGT GK F L++ + G+S I A
Sbjct: 92 NNLDLGTACGKHFRTCVLSVTNVGDSDIAA 121
>gb|AAG21599.1|AC025781_7 (AC025781) 60S ribosomal protein L30, putative; 78827-80170
[Arabidopsis thaliana]
Length = 112
Score = 67.1 bits (161), Expect = 4e-11
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
L +++GK LG ++ ++ KLI+++ N P + +I YYA L+ + V+ +
Sbjct: 18 LALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRN 77
Query: 67 SVELGTLLGKPFVVASLAIVDPGESRIL 94
+V+LGT GK F V+ L+IVDPG+S I+
Sbjct: 78 NVDLGTACGKYFRVSCLSIVDPGDSDII 105
>gi|11499474 LSU ribosomal protein L30E (rpl30E) [Archaeoglobus fulgidus]
>gi|6094073|sp|O28389|RL3E_ARCFU 50S RIBOSOMAL PROTEIN
L30E >gi|7441097|pir||A69486 LSU ribosomal protein L30E
(rpl30E) homolog - Archaeoglobus fulgidus
>gi|2648662|gb|AAB89372.1| (AE000972) LSU ribosomal
protein L30E (rpl30E) [Archaeoglobus fulgidus]
Length = 86
Score = 66.7 bits (160), Expect = 6e-11
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT 66
++ L+TG LGS T++ + G AK +IVA N P+E+ + I Y D+ + + GT
Sbjct: 8 IKTVLKTGGYRLGSKSTLKSLRNGEAKAVIVASNCPEEVLEKIKSY----DVKILVYNGT 63
Query: 67 SVELGTLLGKPFVVASLAIVD 87
++ELG L GKPF VA++AI +
Sbjct: 64 NMELGALCGKPFSVAAMAITE 84
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.372
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33143045
Number of Sequences: 2977
Number of extensions: 1158366
Number of successful extensions: 3154
Number of sequences better than 1.0e-10: 28
Number of HSP's better than 0.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3126
Number of HSP's gapped (non-prelim): 28
length of query: 99
length of database: 189,106,746
effective HSP length: 55
effective length of query: 44
effective length of database: 156,189,961
effective search space: 6872358284
effective search space used: 6872358284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)