BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7155 (PAB7155) DE:repressor protein, putative
         (73 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75183 probable repressor protein PAB7155 - Pyrococcus abys...   147  1e-35
pir||A64334 hypothetical protein MJ0272 - Methanococcus jannasch...   102  4e-22
sp|Q57720|Y272_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MJ0272    102  4e-22
gi|11499382 repressor protein [Archaeoglobus fulgidus] >gi|32199...    97  3e-20
gi|11499219 repressor protein [Archaeoglobus fulgidus] >gi|32199...    91  1e-18
pir||H75270 transcription regulator, PbsX family - Deinococcus r...    79  5e-15
gi|10803554 ORF H0057 [Halobacterium sp. NRC-1] >gi|7484106|pir|...    78  1e-14
sp|O27383|YD28_METTH HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MTH1...    78  1e-14
pir||D83137 probable transcription regulator PA4077 [imported] -...    73  5e-13
gb|AAG19010.1| (AE005001) Vng0471c [Halobacterium sp. NRC-1]           72  6e-13
gi|10956287 pXO1-40 [Bacillus anthracis] >gi|7474280|pir||H59095...    71  2e-12

>pir||G75183 probable repressor protein PAB7155 - Pyrococcus abyssi  (strain
          Orsay) >gi|5458060|emb|CAB49550.1| (AJ248284) repressor
          protein, putative [Pyrococcus abyssi]
          Length = 73
          
 Score =  147 bits (368), Expect = 1e-35
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF
Sbjct: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60

Query: 61 IYEEELTPRGDNR 73
          IYEEELTPRGDNR
Sbjct: 61 IYEEELTPRGDNR 73


>pir||A64334 hypothetical protein MJ0272 - Methanococcus jannaschii
          >gi|1590997|gb|AAB98257.1| (U67482) repressor protein,
          putative (yorfE) [Methanococcus jannaschii]
          Length = 79
          
 Score =  102 bits (252), Expect = 4e-22
 Identities = 48/65 (73%), Positives = 60/65 (91%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          MKN+L+ +R  + LTQE+LA+ LGV+RQTIIAIEKGKYDPSL+LAFKIA+FFGV+IEDIF
Sbjct: 14 MKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 73

Query: 61 IYEEE 65
          IYE++
Sbjct: 74 IYEDD 78


>sp|Q57720|Y272_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MJ0272
          Length = 66
          
 Score =  102 bits (252), Expect = 4e-22
 Identities = 48/65 (73%), Positives = 60/65 (91%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          MKN+L+ +R  + LTQE+LA+ LGV+RQTIIAIEKGKYDPSL+LAFKIA+FFGV+IEDIF
Sbjct: 1  MKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60

Query: 61 IYEEE 65
          IYE++
Sbjct: 61 IYEDD 65


>gi|11499382 repressor protein [Archaeoglobus fulgidus]
          >gi|3219980|sp|O28481|YH93_ARCFU HYPOTHETICAL
          TRANSCRIPTIONAL REGULATOR AF1793
          >gi|7483936|pir||H69473 repressor protein homolog -
          Archaeoglobus fulgidus >gi|2648767|gb|AAB89470.1|
          (AE000979) repressor protein [Archaeoglobus fulgidus]
          Length = 70
          
 Score = 96.7 bits (237), Expect = 3e-20
 Identities = 43/65 (66%), Positives = 57/65 (87%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          M+ R+REFR KYG+TQEELA+ +GV R+TI+ +EKGKY+PSLRLA+KIAR F  RIED+F
Sbjct: 1  MRTRIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLF 60

Query: 61 IYEEE 65
          I+++E
Sbjct: 61 IFDDE 65


>gi|11499219 repressor protein [Archaeoglobus fulgidus]
          >gi|3219982|sp|O28646|YG27_ARCFU HYPOTHETICAL
          TRANSCRIPTIONAL REGULATOR AF1627
          >gi|7483935|pir||B69453 repressor protein homolog -
          Archaeoglobus fulgidus >gi|2648932|gb|AAB89623.1|
          (AE000990) repressor protein [Archaeoglobus fulgidus]
          Length = 71
          
 Score = 91.3 bits (223), Expect = 1e-18
 Identities = 40/65 (61%), Positives = 56/65 (85%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          M+ R++EFR K+ +TQEELA+ +GV R+TI+ +EKGKY+PSL+LA+KIAR F  +IEDIF
Sbjct: 1  MRTRIKEFRAKFNMTQEELAKRVGVRRETIVFLEKGKYNPSLKLAYKIARVFNAKIEDIF 60

Query: 61 IYEEE 65
          I++EE
Sbjct: 61 IFDEE 65


>pir||H75270 transcription regulator, PbsX family - Deinococcus radiodurans
          (strain R1) >gi|6460274|gb|AAF11998.1|AE002075_2
          (AE002075) transcriptional regulator, PbsX family
          [Deinococcus radiodurans]
          Length = 64
          
 Score = 79.2 bits (192), Expect = 5e-15
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          MKNR++  R ++ LTQ +LA  L V+RQTI A+E GKYDPSL LAFK+AR FG+RIEDIF
Sbjct: 1  MKNRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIF 60


>gi|10803554 ORF H0057 [Halobacterium sp. NRC-1] >gi|7484106|pir||T08224
          probable repressor protein H0057 - Halobacterium sp.
          (strain NRC-1) insertion sequence ISH7-1 plasmid
          pNRC100 >gi|2822285|gb|AAC82791.1| (AF016485) ORF H0057
          [Halobacterium sp. NRC-1] >gi|10584071|gb|AAG20708.1|
          (AE005140) Vng6009h [Halobacterium sp. NRC-1]
          Length = 65
          
 Score = 78.0 bits (189), Expect = 1e-14
 Identities = 37/65 (56%), Positives = 50/65 (76%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          M+N L+ +R K+ LTQE+LA+ +GVTRQTI A+E  +YDPSL LAFK+A +F   IEDIF
Sbjct: 1  MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIF 60

Query: 61 IYEEE 65
           Y+ +
Sbjct: 61 SYDSD 65


>sp|O27383|YD28_METTH HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MTH1328
          >gi|7482111|pir||E69043 conserved hypothetical protein
          MTH1328 - Methanobacterium thermoautotrophicum (strain
          Delta H) >gi|2622434|gb|AAB85806.1| (AE000896)
          conserved protein [Methanobacterium
          thermoautotrophicum]
          Length = 69
          
 Score = 77.6 bits (188), Expect = 1e-14
 Identities = 41/66 (62%), Positives = 51/66 (77%), Gaps = 1/66 (1%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFG-VRIEDI 59
          M+  +RE R++ GLTQEELA  +GVTRQTIIA+EKG+Y PSL LA +IAR  G   IEDI
Sbjct: 1  MRTLIREHRKELGLTQEELAERVGVTRQTIIALEKGRYSPSLILAHRIARALGREHIEDI 60

Query: 60 FIYEEE 65
          FI +E+
Sbjct: 61 FILDED 66


>pir||D83137 probable transcription regulator PA4077 [imported] - Pseudomonas
          aeruginosa (strain PAO1)
          >gi|9950275|gb|AAG07464.1|AE004823_10 (AE004823)
          probable transcriptional regulator [Pseudomonas
          aeruginosa]
          Length = 68
          
 Score = 72.6 bits (175), Expect = 5e-13
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          M+NR+RE R + G +Q ELA  L V+RQT+ AIE G+YDPSL LAFK+AR FG+ IE IF
Sbjct: 1  MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIF 60


>gb|AAG19010.1| (AE005001) Vng0471c [Halobacterium sp. NRC-1]
          Length = 66
          
 Score = 72.2 bits (174), Expect = 6e-13
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          M+N +RE R +  L+Q +LA  +GVTRQTI AIE+ +YDPS+ LAFK+A FF  RIED+F
Sbjct: 1  MRNHVRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLF 60


>gi|10956287 pXO1-40 [Bacillus anthracis] >gi|7474280|pir||H59095 hypothetical
          protein pXO1-40 - Bacillus anthracis virulence plasmid
          pXO1 >gi|4894256|gb|AAD32344.1|AAD32344 (AF065404)
          pXO1-40 [Bacillus anthracis]
          Length = 65
          
 Score = 70.6 bits (170), Expect = 2e-12
 Identities = 32/63 (50%), Positives = 48/63 (75%)

Query: 1  MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
          +KN+++E R ++ +TQ ++A+ L VTRQTI+AIE   Y+PSL LA KIA +F +++EDIF
Sbjct: 3  VKNKIKELRVQHEITQVQMAKDLQVTRQTIVAIENNHYNPSLELALKIAHYFNLKMEDIF 62

Query: 61 IYE 63
            E
Sbjct: 63 TLE 65


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.145    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25340194
Number of Sequences: 2977
Number of extensions: 817093
Number of successful extensions: 3291
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3280
Number of HSP's gapped (non-prelim): 11
length of query: 73
length of database: 189,106,746
effective HSP length: 52
effective length of query: 21
effective length of database: 157,985,422
effective search space: 3317693862
effective search space used: 3317693862
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 156 (65.2 bits)