BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7155 (PAB7155) DE:repressor protein, putative
(73 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75183 probable repressor protein PAB7155 - Pyrococcus abys... 147 1e-35
pir||A64334 hypothetical protein MJ0272 - Methanococcus jannasch... 102 4e-22
sp|Q57720|Y272_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MJ0272 102 4e-22
gi|11499382 repressor protein [Archaeoglobus fulgidus] >gi|32199... 97 3e-20
gi|11499219 repressor protein [Archaeoglobus fulgidus] >gi|32199... 91 1e-18
pir||H75270 transcription regulator, PbsX family - Deinococcus r... 79 5e-15
gi|10803554 ORF H0057 [Halobacterium sp. NRC-1] >gi|7484106|pir|... 78 1e-14
sp|O27383|YD28_METTH HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MTH1... 78 1e-14
pir||D83137 probable transcription regulator PA4077 [imported] -... 73 5e-13
gb|AAG19010.1| (AE005001) Vng0471c [Halobacterium sp. NRC-1] 72 6e-13
gi|10956287 pXO1-40 [Bacillus anthracis] >gi|7474280|pir||H59095... 71 2e-12
>pir||G75183 probable repressor protein PAB7155 - Pyrococcus abyssi (strain
Orsay) >gi|5458060|emb|CAB49550.1| (AJ248284) repressor
protein, putative [Pyrococcus abyssi]
Length = 73
Score = 147 bits (368), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF
Sbjct: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
Query: 61 IYEEELTPRGDNR 73
IYEEELTPRGDNR
Sbjct: 61 IYEEELTPRGDNR 73
>pir||A64334 hypothetical protein MJ0272 - Methanococcus jannaschii
>gi|1590997|gb|AAB98257.1| (U67482) repressor protein,
putative (yorfE) [Methanococcus jannaschii]
Length = 79
Score = 102 bits (252), Expect = 4e-22
Identities = 48/65 (73%), Positives = 60/65 (91%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
MKN+L+ +R + LTQE+LA+ LGV+RQTIIAIEKGKYDPSL+LAFKIA+FFGV+IEDIF
Sbjct: 14 MKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 73
Query: 61 IYEEE 65
IYE++
Sbjct: 74 IYEDD 78
>sp|Q57720|Y272_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MJ0272
Length = 66
Score = 102 bits (252), Expect = 4e-22
Identities = 48/65 (73%), Positives = 60/65 (91%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
MKN+L+ +R + LTQE+LA+ LGV+RQTIIAIEKGKYDPSL+LAFKIA+FFGV+IEDIF
Sbjct: 1 MKNKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60
Query: 61 IYEEE 65
IYE++
Sbjct: 61 IYEDD 65
>gi|11499382 repressor protein [Archaeoglobus fulgidus]
>gi|3219980|sp|O28481|YH93_ARCFU HYPOTHETICAL
TRANSCRIPTIONAL REGULATOR AF1793
>gi|7483936|pir||H69473 repressor protein homolog -
Archaeoglobus fulgidus >gi|2648767|gb|AAB89470.1|
(AE000979) repressor protein [Archaeoglobus fulgidus]
Length = 70
Score = 96.7 bits (237), Expect = 3e-20
Identities = 43/65 (66%), Positives = 57/65 (87%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
M+ R+REFR KYG+TQEELA+ +GV R+TI+ +EKGKY+PSLRLA+KIAR F RIED+F
Sbjct: 1 MRTRIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLF 60
Query: 61 IYEEE 65
I+++E
Sbjct: 61 IFDDE 65
>gi|11499219 repressor protein [Archaeoglobus fulgidus]
>gi|3219982|sp|O28646|YG27_ARCFU HYPOTHETICAL
TRANSCRIPTIONAL REGULATOR AF1627
>gi|7483935|pir||B69453 repressor protein homolog -
Archaeoglobus fulgidus >gi|2648932|gb|AAB89623.1|
(AE000990) repressor protein [Archaeoglobus fulgidus]
Length = 71
Score = 91.3 bits (223), Expect = 1e-18
Identities = 40/65 (61%), Positives = 56/65 (85%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
M+ R++EFR K+ +TQEELA+ +GV R+TI+ +EKGKY+PSL+LA+KIAR F +IEDIF
Sbjct: 1 MRTRIKEFRAKFNMTQEELAKRVGVRRETIVFLEKGKYNPSLKLAYKIARVFNAKIEDIF 60
Query: 61 IYEEE 65
I++EE
Sbjct: 61 IFDEE 65
>pir||H75270 transcription regulator, PbsX family - Deinococcus radiodurans
(strain R1) >gi|6460274|gb|AAF11998.1|AE002075_2
(AE002075) transcriptional regulator, PbsX family
[Deinococcus radiodurans]
Length = 64
Score = 79.2 bits (192), Expect = 5e-15
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
MKNR++ R ++ LTQ +LA L V+RQTI A+E GKYDPSL LAFK+AR FG+RIEDIF
Sbjct: 1 MKNRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIF 60
>gi|10803554 ORF H0057 [Halobacterium sp. NRC-1] >gi|7484106|pir||T08224
probable repressor protein H0057 - Halobacterium sp.
(strain NRC-1) insertion sequence ISH7-1 plasmid
pNRC100 >gi|2822285|gb|AAC82791.1| (AF016485) ORF H0057
[Halobacterium sp. NRC-1] >gi|10584071|gb|AAG20708.1|
(AE005140) Vng6009h [Halobacterium sp. NRC-1]
Length = 65
Score = 78.0 bits (189), Expect = 1e-14
Identities = 37/65 (56%), Positives = 50/65 (76%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
M+N L+ +R K+ LTQE+LA+ +GVTRQTI A+E +YDPSL LAFK+A +F IEDIF
Sbjct: 1 MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIF 60
Query: 61 IYEEE 65
Y+ +
Sbjct: 61 SYDSD 65
>sp|O27383|YD28_METTH HYPOTHETICAL TRANSCRIPTIONAL REGULATOR MTH1328
>gi|7482111|pir||E69043 conserved hypothetical protein
MTH1328 - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622434|gb|AAB85806.1| (AE000896)
conserved protein [Methanobacterium
thermoautotrophicum]
Length = 69
Score = 77.6 bits (188), Expect = 1e-14
Identities = 41/66 (62%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFG-VRIEDI 59
M+ +RE R++ GLTQEELA +GVTRQTIIA+EKG+Y PSL LA +IAR G IEDI
Sbjct: 1 MRTLIREHRKELGLTQEELAERVGVTRQTIIALEKGRYSPSLILAHRIARALGREHIEDI 60
Query: 60 FIYEEE 65
FI +E+
Sbjct: 61 FILDED 66
>pir||D83137 probable transcription regulator PA4077 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950275|gb|AAG07464.1|AE004823_10 (AE004823)
probable transcriptional regulator [Pseudomonas
aeruginosa]
Length = 68
Score = 72.6 bits (175), Expect = 5e-13
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
M+NR+RE R + G +Q ELA L V+RQT+ AIE G+YDPSL LAFK+AR FG+ IE IF
Sbjct: 1 MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIF 60
>gb|AAG19010.1| (AE005001) Vng0471c [Halobacterium sp. NRC-1]
Length = 66
Score = 72.2 bits (174), Expect = 6e-13
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
M+N +RE R + L+Q +LA +GVTRQTI AIE+ +YDPS+ LAFK+A FF RIED+F
Sbjct: 1 MRNHVRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLF 60
>gi|10956287 pXO1-40 [Bacillus anthracis] >gi|7474280|pir||H59095 hypothetical
protein pXO1-40 - Bacillus anthracis virulence plasmid
pXO1 >gi|4894256|gb|AAD32344.1|AAD32344 (AF065404)
pXO1-40 [Bacillus anthracis]
Length = 65
Score = 70.6 bits (170), Expect = 2e-12
Identities = 32/63 (50%), Positives = 48/63 (75%)
Query: 1 MKNRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60
+KN+++E R ++ +TQ ++A+ L VTRQTI+AIE Y+PSL LA KIA +F +++EDIF
Sbjct: 3 VKNKIKELRVQHEITQVQMAKDLQVTRQTIVAIENNHYNPSLELALKIAHYFNLKMEDIF 62
Query: 61 IYE 63
E
Sbjct: 63 TLE 65
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.145 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25340194
Number of Sequences: 2977
Number of extensions: 817093
Number of successful extensions: 3291
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3280
Number of HSP's gapped (non-prelim): 11
length of query: 73
length of database: 189,106,746
effective HSP length: 52
effective length of query: 21
effective length of database: 157,985,422
effective search space: 3317693862
effective search space used: 3317693862
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 156 (65.2 bits)