BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7160 (rpl37E) DE:LSU ribosomal protein L37E (rpl37E)
         (62 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O74015|RL37_PYRHO 50S RIBOSOMAL PROTEIN L37E >gi|7440761|pir|...   140  1e-33
sp|Q9YEQ4|RL37_AERPE 50S RIBOSOMAL PROTEIN L37E >gi|7521372|pir|...    94  2e-19
gb|AAK41052.1| LSU ribosomal protein L37E (rpl37E) [Sulfolobus s...    88  1e-17
gi|11498480 LSU ribosomal protein L37E (rpl37E) [Archaeoglobus f...    86  4e-17
sp|O26744|RL37_METTH 50S RIBOSOMAL PROTEIN L37E >gi|7440762|pir|...    81  2e-15
sp|P54011|RL37_METJA 50S RIBOSOMAL PROTEIN L37E >gi|2119125|pir|...    80  2e-15
sp|P32410|RL37_HALMA 50S RIBOSOMAL PROTEIN L37E (L35E) >gi|42171...    69  4e-12
gb|AAG19794.1| (AE005064) 50S ribosomal protein L37E; Rpl37e [Ha...    68  2e-11
sp|O44125|RL37_SCHMA 60S RIBOSOMAL PROTEIN L37 >gi|2665824|gb|AA...    67  3e-11

>sp|O74015|RL37_PYRHO 50S RIBOSOMAL PROTEIN L37E >gi|7440761|pir||C71028 probable
          ribosomal proteinL37 - Pyrococcus horikoshii
          >gi|7519914|pir||C75106 lsu ribosomal protein l37e
          (rpl37e) PAB7160 - Pyrococcus abyssi (strain Orsay)
          >gi|3257944|dbj|BAA30627.1| (AP000006) 62aa long
          hypothetical 50S ribosomal proteinL37 [Pyrococcus
          horikoshii] >gi|5458075|emb|CAB49564.1| (AJ248285) LSU
          ribosomal protein L37E (rpl37E) [Pyrococcus abyssi]
          Length = 62
          
 Score =  140 bits (350), Expect = 1e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN 60
          MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN
Sbjct: 1  MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN 60

Query: 61 VH 62
          VH
Sbjct: 61 VH 62


>sp|Q9YEQ4|RL37_AERPE 50S RIBOSOMAL PROTEIN L37E >gi|7521372|pir||H72749 probable
          ribosomal protein L37 APES023 - Aeropyrum pernix
          (strain K1) >gi|5104176|dbj|BAA79492.1| (AP000059) 62aa
          long hypothetical 50S ribosomal protein L37 [Aeropyrum
          pernix]
          Length = 62
          
 Score = 94.0 bits (230), Expect = 2e-19
 Identities = 39/62 (62%), Positives = 50/62 (79%), Gaps = 1/62 (1%)

Query: 1  MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRW-SKKWKKKK 59
          M  GTPS+GK  ++ THI CRRCGR+++NV KGYCAACGFGRSRR+R+Y W +KKW + +
Sbjct: 1  MGKGTPSMGKHGRSKTHIVCRRCGRRSYNVAKGYCAACGFGRSRRMRRYSWQNKKWNRVR 60

Query: 60 NV 61
           V
Sbjct: 61 VV 62


>gb|AAK41052.1| LSU ribosomal protein L37E (rpl37E) [Sulfolobus solfataricus]
          Length = 61
          
 Score = 88.2 bits (215), Expect = 1e-17
 Identities = 35/51 (68%), Positives = 42/51 (81%)

Query: 4  GTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
          GTPS GK NK+ THIRCRRCGR A+NV K YCAACGFGR++++R+Y W  K
Sbjct: 3  GTPSFGKMNKSHTHIRCRRCGRNAYNVSKHYCAACGFGRTKKIRRYSWQNK 53


>gi|11498480 LSU ribosomal protein L37E (rpl37E) [Archaeoglobus fulgidus]
          >gi|6094068|sp|O29387|RL37_ARCFU 50S RIBOSOMAL PROTEIN
          L37E >gi|7440763|pir||B69359 LSU ribosomal protein L37E
          (rpl37E) homolog - Archaeoglobus fulgidus
          >gi|2649737|gb|AAB90373.1| (AE001044) LSU ribosomal
          protein L37E (rpl37E) [Archaeoglobus fulgidus]
          Length = 59
          
 Score = 86.2 bits (210), Expect = 4e-17
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1  MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKK 58
          MS GT ++GK+ +   HIRCRRCGR +F+ +KGYCAACGFGRS+RLR Y W +K K +
Sbjct: 1  MSDGTAAMGKKGRKRVHIRCRRCGRHSFHRRKGYCAACGFGRSKRLRSYNWVRKKKNR 58


>sp|O26744|RL37_METTH 50S RIBOSOMAL PROTEIN L37E >gi|7440762|pir||B69186 ribosomal
          protein L37 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621730|gb|AAB85153.1| (AE000845)
          ribosomal protein L37 [Methanobacterium
          thermoautotrophicum]
          Length = 60
          
 Score = 80.8 bits (196), Expect = 2e-15
 Identities = 34/51 (66%), Positives = 41/51 (79%), Gaps = 1/51 (1%)

Query: 4  GTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
          GTPS GKRNK   HIRCRRCG+ +++V+K  CAACGFGRSRR+R+Y W  K
Sbjct: 3  GTPSFGKRNKN-LHIRCRRCGKNSYHVRKKVCAACGFGRSRRIRRYSWQNK 52


>sp|P54011|RL37_METJA 50S RIBOSOMAL PROTEIN L37E >gi|2119125|pir||B64312 ribosomal
          protein L37 - Methanococcus jannaschii
          >gi|1590876|gb|AAB98078.1| (U67467) LSU ribosomal
          protein L37E [Methanococcus jannaschii]
          Length = 61
          
 Score = 80.4 bits (195), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 1  MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN 60
          MS GTPS+GKRNK   HIRCRRCGR+A++V+K  CAACGF  ++R+RKY W  K    K 
Sbjct: 1  MSKGTPSMGKRNKGSYHIRCRRCGRRAYHVRKKRCAACGF-PNKRMRKYSWQNKKVNGKR 59

Query: 61 V 61
          +
Sbjct: 60 I 60


>sp|P32410|RL37_HALMA 50S RIBOSOMAL PROTEIN L37E (L35E) >gi|421711|pir||S33789
          ribosomal protein L37.eR [validated] - Haloarcula
          marismortui >gi|10120943|pdb|1FFK|X Chain X, Crystal
          Structure Of The Large Ribosomal Subunit From
          Haloarcula Marismortui At 2.4 Angstrom Resolution
          >gi|385449|gb|AAB26934.1| 50S ribosomal subunit protein
          HL35e [Haloarcula marismortui, Peptide, 56 aa]
          Length = 56
          
 Score = 69.5 bits (167), Expect = 4e-12
 Identities = 28/52 (53%), Positives = 38/52 (72%), Gaps = 1/52 (1%)

Query: 3  SGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
          +GTPS GK+N T TH +CRRCG K+++ KK  C++CGFG+S + R Y W  K
Sbjct: 3  AGTPSQGKKNTT-THTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSK 53


>gb|AAG19794.1| (AE005064) 50S ribosomal protein L37E; Rpl37e [Halobacterium sp.
          NRC-1]
          Length = 58
          
 Score = 67.5 bits (162), Expect = 2e-11
 Identities = 28/52 (53%), Positives = 37/52 (70%), Gaps = 1/52 (1%)

Query: 3  SGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
          +GTPS GK+N T TH +CRRCG K+++ KK  C++CGFG S + R Y W  K
Sbjct: 4  AGTPSQGKKNTT-THTKCRRCGEKSYHTKKKVCSSCGFGASAKRRDYEWQGK 54


>sp|O44125|RL37_SCHMA 60S RIBOSOMAL PROTEIN L37 >gi|2665824|gb|AAB88508.1| (AF035770)
          ribosomal protein L37 [Schistosoma mansoni]
          Length = 88
          
 Score = 66.7 bits (160), Expect = 3e-11
 Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 2/59 (3%)

Query: 1  MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKK 59
          M+ GT S GKR+   +H +CRRCGRK+++++K  C++CG+  S RLRKY WS+K K+++
Sbjct: 1  MTKGTTSFGKRHNK-SHTQCRRCGRKSYHIQKKTCSSCGY-PSARLRKYNWSEKAKRRR 57


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.135    0.461 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28204031
Number of Sequences: 2977
Number of extensions: 925002
Number of successful extensions: 2528
Number of sequences better than 1.0e-10: 9
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2517
Number of HSP's gapped (non-prelim): 9
length of query: 62
length of database: 189,106,746
effective HSP length: 41
effective length of query: 21
effective length of database: 164,568,779
effective search space: 3455944359
effective search space used: 3455944359
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)