BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7160 (rpl37E) DE:LSU ribosomal protein L37E (rpl37E)
(62 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O74015|RL37_PYRHO 50S RIBOSOMAL PROTEIN L37E >gi|7440761|pir|... 140 1e-33
sp|Q9YEQ4|RL37_AERPE 50S RIBOSOMAL PROTEIN L37E >gi|7521372|pir|... 94 2e-19
gb|AAK41052.1| LSU ribosomal protein L37E (rpl37E) [Sulfolobus s... 88 1e-17
gi|11498480 LSU ribosomal protein L37E (rpl37E) [Archaeoglobus f... 86 4e-17
sp|O26744|RL37_METTH 50S RIBOSOMAL PROTEIN L37E >gi|7440762|pir|... 81 2e-15
sp|P54011|RL37_METJA 50S RIBOSOMAL PROTEIN L37E >gi|2119125|pir|... 80 2e-15
sp|P32410|RL37_HALMA 50S RIBOSOMAL PROTEIN L37E (L35E) >gi|42171... 69 4e-12
gb|AAG19794.1| (AE005064) 50S ribosomal protein L37E; Rpl37e [Ha... 68 2e-11
sp|O44125|RL37_SCHMA 60S RIBOSOMAL PROTEIN L37 >gi|2665824|gb|AA... 67 3e-11
>sp|O74015|RL37_PYRHO 50S RIBOSOMAL PROTEIN L37E >gi|7440761|pir||C71028 probable
ribosomal proteinL37 - Pyrococcus horikoshii
>gi|7519914|pir||C75106 lsu ribosomal protein l37e
(rpl37e) PAB7160 - Pyrococcus abyssi (strain Orsay)
>gi|3257944|dbj|BAA30627.1| (AP000006) 62aa long
hypothetical 50S ribosomal proteinL37 [Pyrococcus
horikoshii] >gi|5458075|emb|CAB49564.1| (AJ248285) LSU
ribosomal protein L37E (rpl37E) [Pyrococcus abyssi]
Length = 62
Score = 140 bits (350), Expect = 1e-33
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN 60
MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN
Sbjct: 1 MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN 60
Query: 61 VH 62
VH
Sbjct: 61 VH 62
>sp|Q9YEQ4|RL37_AERPE 50S RIBOSOMAL PROTEIN L37E >gi|7521372|pir||H72749 probable
ribosomal protein L37 APES023 - Aeropyrum pernix
(strain K1) >gi|5104176|dbj|BAA79492.1| (AP000059) 62aa
long hypothetical 50S ribosomal protein L37 [Aeropyrum
pernix]
Length = 62
Score = 94.0 bits (230), Expect = 2e-19
Identities = 39/62 (62%), Positives = 50/62 (79%), Gaps = 1/62 (1%)
Query: 1 MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRW-SKKWKKKK 59
M GTPS+GK ++ THI CRRCGR+++NV KGYCAACGFGRSRR+R+Y W +KKW + +
Sbjct: 1 MGKGTPSMGKHGRSKTHIVCRRCGRRSYNVAKGYCAACGFGRSRRMRRYSWQNKKWNRVR 60
Query: 60 NV 61
V
Sbjct: 61 VV 62
>gb|AAK41052.1| LSU ribosomal protein L37E (rpl37E) [Sulfolobus solfataricus]
Length = 61
Score = 88.2 bits (215), Expect = 1e-17
Identities = 35/51 (68%), Positives = 42/51 (81%)
Query: 4 GTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
GTPS GK NK+ THIRCRRCGR A+NV K YCAACGFGR++++R+Y W K
Sbjct: 3 GTPSFGKMNKSHTHIRCRRCGRNAYNVSKHYCAACGFGRTKKIRRYSWQNK 53
>gi|11498480 LSU ribosomal protein L37E (rpl37E) [Archaeoglobus fulgidus]
>gi|6094068|sp|O29387|RL37_ARCFU 50S RIBOSOMAL PROTEIN
L37E >gi|7440763|pir||B69359 LSU ribosomal protein L37E
(rpl37E) homolog - Archaeoglobus fulgidus
>gi|2649737|gb|AAB90373.1| (AE001044) LSU ribosomal
protein L37E (rpl37E) [Archaeoglobus fulgidus]
Length = 59
Score = 86.2 bits (210), Expect = 4e-17
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 1 MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKK 58
MS GT ++GK+ + HIRCRRCGR +F+ +KGYCAACGFGRS+RLR Y W +K K +
Sbjct: 1 MSDGTAAMGKKGRKRVHIRCRRCGRHSFHRRKGYCAACGFGRSKRLRSYNWVRKKKNR 58
>sp|O26744|RL37_METTH 50S RIBOSOMAL PROTEIN L37E >gi|7440762|pir||B69186 ribosomal
protein L37 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621730|gb|AAB85153.1| (AE000845)
ribosomal protein L37 [Methanobacterium
thermoautotrophicum]
Length = 60
Score = 80.8 bits (196), Expect = 2e-15
Identities = 34/51 (66%), Positives = 41/51 (79%), Gaps = 1/51 (1%)
Query: 4 GTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
GTPS GKRNK HIRCRRCG+ +++V+K CAACGFGRSRR+R+Y W K
Sbjct: 3 GTPSFGKRNKN-LHIRCRRCGKNSYHVRKKVCAACGFGRSRRIRRYSWQNK 52
>sp|P54011|RL37_METJA 50S RIBOSOMAL PROTEIN L37E >gi|2119125|pir||B64312 ribosomal
protein L37 - Methanococcus jannaschii
>gi|1590876|gb|AAB98078.1| (U67467) LSU ribosomal
protein L37E [Methanococcus jannaschii]
Length = 61
Score = 80.4 bits (195), Expect = 2e-15
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 1 MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKKN 60
MS GTPS+GKRNK HIRCRRCGR+A++V+K CAACGF ++R+RKY W K K
Sbjct: 1 MSKGTPSMGKRNKGSYHIRCRRCGRRAYHVRKKRCAACGF-PNKRMRKYSWQNKKVNGKR 59
Query: 61 V 61
+
Sbjct: 60 I 60
>sp|P32410|RL37_HALMA 50S RIBOSOMAL PROTEIN L37E (L35E) >gi|421711|pir||S33789
ribosomal protein L37.eR [validated] - Haloarcula
marismortui >gi|10120943|pdb|1FFK|X Chain X, Crystal
Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
>gi|385449|gb|AAB26934.1| 50S ribosomal subunit protein
HL35e [Haloarcula marismortui, Peptide, 56 aa]
Length = 56
Score = 69.5 bits (167), Expect = 4e-12
Identities = 28/52 (53%), Positives = 38/52 (72%), Gaps = 1/52 (1%)
Query: 3 SGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
+GTPS GK+N T TH +CRRCG K+++ KK C++CGFG+S + R Y W K
Sbjct: 3 AGTPSQGKKNTT-THTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSK 53
>gb|AAG19794.1| (AE005064) 50S ribosomal protein L37E; Rpl37e [Halobacterium sp.
NRC-1]
Length = 58
Score = 67.5 bits (162), Expect = 2e-11
Identities = 28/52 (53%), Positives = 37/52 (70%), Gaps = 1/52 (1%)
Query: 3 SGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKK 54
+GTPS GK+N T TH +CRRCG K+++ KK C++CGFG S + R Y W K
Sbjct: 4 AGTPSQGKKNTT-THTKCRRCGEKSYHTKKKVCSSCGFGASAKRRDYEWQGK 54
>sp|O44125|RL37_SCHMA 60S RIBOSOMAL PROTEIN L37 >gi|2665824|gb|AAB88508.1| (AF035770)
ribosomal protein L37 [Schistosoma mansoni]
Length = 88
Score = 66.7 bits (160), Expect = 3e-11
Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 1 MSSGTPSLGKRNKTPTHIRCRRCGRKAFNVKKGYCAACGFGRSRRLRKYRWSKKWKKKK 59
M+ GT S GKR+ +H +CRRCGRK+++++K C++CG+ S RLRKY WS+K K+++
Sbjct: 1 MTKGTTSFGKRHNK-SHTQCRRCGRKSYHIQKKTCSSCGY-PSARLRKYNWSEKAKRRR 57
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.135 0.461
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28204031
Number of Sequences: 2977
Number of extensions: 925002
Number of successful extensions: 2528
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2517
Number of HSP's gapped (non-prelim): 9
length of query: 62
length of database: 189,106,746
effective HSP length: 41
effective length of query: 21
effective length of database: 164,568,779
effective search space: 3455944359
effective search space used: 3455944359
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)