BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7165 (rps28E) DE:SSU ribosomal protein S28E (rps28E)
(71 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O74014|RS28_PYRHO 30S RIBOSOMAL PROTEIN S28E >gi|7440561|pir|... 141 1e-33
sp|Q9Y9A6|RS28_AERPE 30S RIBOSOMAL PROTEIN S28E >gi|7521384|pir|... 112 4e-25
gb|AAK40573.1| SSU ribosomal protein S28E (rps28E) [Sulfolobus s... 110 2e-24
emb|CAC12242.1| (AL445066) probable 30S ribosomal protein S28 [T... 94 1e-19
gi|11498371 SSU ribosomal protein S28E (rps28E) [Archaeoglobus f... 91 1e-18
sp|P54065|RS28_METJA 30S RIBOSOMAL PROTEIN S28E >gi|2119100|pir|... 91 1e-18
sp|O26356|RS28_METTH 30S RIBOSOMAL PROTEIN S28E >gi|7440563|pir|... 91 1e-18
dbj|BAB17306.1| (AB036344) SSU ribosomal protein S28E [Halobacte... 80 3e-15
sp|P33286|RS28_KLUMA 40S RIBOSOMAL PROTEIN S28 (S33) >gi|320171|... 71 1e-12
sp|P33285|RS28_KLULA 40S RIBOSOMAL PROTEIN S28 (S33) >gi|320172|... 71 1e-12
gb|AAF56992.1| (AE003772) CG15527 gene product [Drosophila melan... 71 1e-12
gi|6324741 Ribosomal protein S28A (S33A) (YS27); Rps28ap [Saccha... 70 3e-12
gi|6323294 Ribosomal protein S28B (S33B) (YS27); Rps28bp [Saccha... 70 3e-12
emb|CAA10101.1| (AJ012653) ribosomal protein S28 [Prunus persica... 69 4e-12
emb|CAA10104.1| (AJ012656) ribosomal protein S28 [Prunus persica] 68 1e-11
emb|CAA04565.1| (AJ001161) rpS28 [Hordeum vulgare] 68 2e-11
sp|P46302|RS28_MAIZE 40S RIBOSOMAL PROTEIN S28 >gi|629860|pir||S... 67 2e-11
sp|Q10421|RS28_SCHPO 40S RIBOSOMAL PROTEIN S28 (S33) >gi|7492335... 66 4e-11
pir||T45114 ribosomal protein S28 - fission yeast (Schizosacchar... 66 4e-11
pir||T48412 RIBOSOMAL PROTEIN S28-like - Arabidopsis thaliana >g... 66 6e-11
sp|P34789|RS28_ARATH 40S RIBOSOMAL PROTEIN S28 >gi|409184|gb|AAA... 65 8e-11
>sp|O74014|RS28_PYRHO 30S RIBOSOMAL PROTEIN S28E >gi|7440561|pir||C71025 probable
ribosomal protein S28 - Pyrococcus horikoshii
>gi|7521701|pir||D75109 ssu ribosomal protein s28e
(rps28e) PAB7165 - Pyrococcus abyssi (strain Orsay)
>gi|3257920|dbj|BAA30603.1| (AP000006) 71aa long
hypothetical 50S ribosomal protein S28 [Pyrococcus
horikoshii] >gi|5458100|emb|CAB49589.1| (AJ248285) SSU
ribosomal protein S28E (rps28E) [Pyrococcus abyssi]
Length = 71
Score = 141 bits (351), Expect = 1e-33
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRET 60
MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRET
Sbjct: 1 MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRET 60
Query: 61 EREAREIKSRR 71
EREAREIKSRR
Sbjct: 61 EREAREIKSRR 71
>sp|Q9Y9A6|RS28_AERPE 30S RIBOSOMAL PROTEIN S28E >gi|7521384|pir||B72467 probable
ribosomal protein S28 APES071 - Aeropyrum pernix
(strain K1) >gi|5106083|dbj|BAA81394.1| (AP000064) 91aa
long hypothetical 30S ribosomal protein S28 [Aeropyrum
pernix]
Length = 91
Score = 112 bits (278), Expect = 4e-25
Identities = 53/69 (76%), Positives = 63/69 (90%)
Query: 3 EDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETER 62
E+ G+PAEVI+IIGRTG TG+VTQV+VRILEGRDKGR++ RNV GPVR+GDILILRETER
Sbjct: 23 EEFGFPAEVIQIIGRTGVTGEVTQVRVRILEGRDKGRILTRNVIGPVRIGDILILRETER 82
Query: 63 EAREIKSRR 71
EAR++ RR
Sbjct: 83 EARKLSGRR 91
>gb|AAK40573.1| SSU ribosomal protein S28E (rps28E) [Sulfolobus solfataricus]
Length = 98
Score = 110 bits (273), Expect = 2e-24
Identities = 51/69 (73%), Positives = 64/69 (91%)
Query: 3 EDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETER 62
E+ G+PAEVI+I+ RTG TG+VTQV+VR+LEGRDKGR++ RNV+GPVRVGDILILRETER
Sbjct: 30 EEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETER 89
Query: 63 EAREIKSRR 71
EAR+I ++R
Sbjct: 90 EARKITTKR 98
>emb|CAC12242.1| (AL445066) probable 30S ribosomal protein S28 [Thermoplasma
acidophilum]
Length = 69
Score = 94.4 bits (231), Expect = 1e-19
Identities = 45/67 (67%), Positives = 55/67 (81%)
Query: 4 DEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETERE 63
+E PAEV+EIIGRTG TG+ T VKVR+L GRD+GR+I RNV GPVRVGDIL+L ET RE
Sbjct: 3 NEATPAEVVEIIGRTGMTGEATTVKVRVLAGRDQGRIIARNVLGPVRVGDILMLMETARE 62
Query: 64 AREIKSR 70
A+++ R
Sbjct: 63 AKKLSIR 69
>gi|11498371 SSU ribosomal protein S28E (rps28E) [Archaeoglobus fulgidus]
>gi|6647804|sp|O29493|RS28_ARCFU 30S RIBOSOMAL PROTEIN
S28E >gi|7440564|pir||E69345 SSU ribosomal protein S28E
(rps28E) homolog - Archaeoglobus fulgidus
>gi|2649841|gb|AAB90467.1| (AE001051) SSU ribosomal
protein S28E (rps28E) [Archaeoglobus fulgidus]
Length = 71
Score = 91.3 bits (223), Expect = 1e-18
Identities = 42/68 (61%), Positives = 57/68 (83%)
Query: 3 EDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETER 62
E++ PAEV+E++GRTG G+VTQVKVR+L G +KGRVI RNV GPV+VGDI++++ET R
Sbjct: 4 EEDIQPAEVVELVGRTGMHGEVTQVKVRVLAGENKGRVITRNVFGPVKVGDIIMIKETAR 63
Query: 63 EAREIKSR 70
EAR++ R
Sbjct: 64 EARKLAVR 71
>sp|P54065|RS28_METJA 30S RIBOSOMAL PROTEIN S28E >gi|2119100|pir||A64450 ribosomal
protein S33 - Methanococcus jannaschii
>gi|1591832|gb|AAB99206.1| (U67562) SSU ribosomal
protein S28E [Methanococcus jannaschii]
Length = 78
Score = 90.9 bits (222), Expect = 1e-18
Identities = 43/67 (64%), Positives = 54/67 (80%)
Query: 5 EGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREA 64
E AEVIE+IGRTG TG + QV+ +IL G+D GRV+ RNV+GPV+VGDI++LRETEREA
Sbjct: 12 EAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETEREA 71
Query: 65 REIKSRR 71
R + RR
Sbjct: 72 RPLDRRR 78
>sp|O26356|RS28_METTH 30S RIBOSOMAL PROTEIN S28E >gi|7440563|pir||B69132 ribosomal
protein S28 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621306|gb|AAB84762.1| (AE000812)
ribosomal protein S28 [Methanobacterium
thermoautotrophicum]
Length = 68
Score = 90.9 bits (222), Expect = 1e-18
Identities = 42/66 (63%), Positives = 55/66 (82%)
Query: 4 DEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETERE 63
D+ PAEVIE++ RTG TG+V QVK RIL+GRDKGR++ RNV GP+R GDIL+L +T RE
Sbjct: 2 DDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIRE 61
Query: 64 AREIKS 69
A+EI++
Sbjct: 62 AKEIRT 67
>dbj|BAB17306.1| (AB036344) SSU ribosomal protein S28E [Halobacterium cutirubrum]
Length = 74
Score = 80.0 bits (194), Expect = 3e-15
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 2 AEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETE 61
+E+ PAEVIE++G+TG G+ QVK RI EG ++GR+I RNV GPVRVGD++ L+ET
Sbjct: 6 SEEGATPAEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVIQLKETA 65
Query: 62 REAREI 67
REA I
Sbjct: 66 READSI 71
>sp|P33286|RS28_KLUMA 40S RIBOSOMAL PROTEIN S28 (S33) >gi|320171|pir||S30006 ribosomal
protein S28.e - yeast (Kluyveromyces marxianus)
>gi|395172|emb|CAA49297.1| (X69583) ribosomal protein
S33 [Kluyveromyces marxianus]
Length = 67
Score = 71.4 bits (172), Expect = 1e-12
Identities = 36/60 (60%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A+VI+++GRTG+ G VTQV+V LE D R I RNV+GPVR GDIL+L E+EREAR ++
Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEFLE--DTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
>sp|P33285|RS28_KLULA 40S RIBOSOMAL PROTEIN S28 (S33) >gi|320172|pir||S30005 ribosomal
protein S28.e - yeast (Kluyveromyces marxianus var.
lactis) >gi|395170|emb|CAA49296.1| (X69582) ribosomal
protein S33 [Kluyveromyces lactis]
Length = 67
Score = 71.4 bits (172), Expect = 1e-12
Identities = 36/60 (60%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A+VI+++GRTG+ G VTQV+V LE D R I RNV+GPVR GDIL+L E+EREAR ++
Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEFLE--DTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
>gb|AAF56992.1| (AE003772) CG15527 gene product [Drosophila melanogaster]
Length = 64
Score = 71.0 bits (171), Expect = 1e-12
Identities = 38/65 (58%), Positives = 47/65 (71%), Gaps = 2/65 (3%)
Query: 4 DEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETERE 63
D+ A V+EI+GRTG+ G TQV+V L D+ R I RNV+GPVRVGDIL L ETERE
Sbjct: 2 DKPQYARVVEILGRTGSQGQCTQVRVEFLG--DQSRQIIRNVKGPVRVGDILSLLETERE 59
Query: 64 AREIK 68
AR ++
Sbjct: 60 ARRLR 64
>gi|6324741 Ribosomal protein S28A (S33A) (YS27); Rps28ap [Saccharomyces
cerevisiae] >gi|71050|pir||R3BY33 ribosomal protein
S28.e.A, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|4415|emb|CAA24958.1| (X00128) S33 protein
[Saccharomyces cerevisiae] >gi|1293728|gb|AAB47414.1|
(U55021) Rps33p [Saccharomyces cerevisiae]
>gi|1420411|emb|CAA99373.1| (Z75075) ORF YOR167c
[Saccharomyces cerevisiae]
Length = 67
Score = 69.9 bits (168), Expect = 3e-12
Identities = 35/60 (58%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A+VI+++GRTG+ G VTQV+V LE D R I RNV+GPVR DIL+L E+EREAR ++
Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEFLE--DTSRTIVRNVKGPVRENDILVLMESEREARRLR 67
>gi|6323294 Ribosomal protein S28B (S33B) (YS27); Rps28bp [Saccharomyces
cerevisiae] >gi|1350979|sp|P02380|RS28_YEAST 40S
RIBOSOMAL PROTEIN S28 (S33) (YS27)
>gi|1078339|pir||S51401 ribosomal protein S28.e.B,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|577176|gb|AAB67375.1| (U17244) Rps33bp: 40S
ribosomal protein YL27 [Saccharomyces cerevisiae]
Length = 67
Score = 69.9 bits (168), Expect = 3e-12
Identities = 35/60 (58%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A+VI+++GRTG+ G VTQV+V LE D R I RNV+GPVR DIL+L E+EREAR ++
Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEFLE--DTSRTIVRNVKGPVRENDILVLMESEREARRLR 67
>emb|CAA10101.1| (AJ012653) ribosomal protein S28 [Prunus persica]
>gi|3947721|emb|CAA10102.1| (AJ012654) ribosomal
protein S28 [Prunus persica]
>gi|3947723|emb|CAA10103.1| (AJ012655) ribosomal
protein S28 [Prunus persica]
Length = 65
Score = 69.5 bits (167), Expect = 4e-12
Identities = 34/60 (56%), Positives = 47/60 (77%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A V++++GRTG+ G VTQV+V+ L+ D+ R I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRFIMRNVKGPVREGDILTLLESEREARRLR 65
>emb|CAA10104.1| (AJ012656) ribosomal protein S28 [Prunus persica]
Length = 65
Score = 67.9 bits (163), Expect = 1e-11
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A V++++GRTG+ G VTQV+V+ L D+ R I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFLG--DQNRFIMRNVKGPVREGDILTLLESEREARRLR 65
>emb|CAA04565.1| (AJ001161) rpS28 [Hordeum vulgare]
Length = 65
Score = 67.5 bits (162), Expect = 2e-11
Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A V++++GRTG+ G VTQV+V+ L+ ++ R+I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFLDHQN--RLIMRNVKGPVREGDILTLLESEREARRLR 65
>sp|P46302|RS28_MAIZE 40S RIBOSOMAL PROTEIN S28 >gi|629860|pir||S49035 ribosomal
protein S28 - maize >gi|557682|emb|CAA57636.1| (X82124)
small subunit ribosomal protein S28 [Zea mays]
Length = 65
Score = 67.1 bits (161), Expect = 2e-11
Identities = 33/60 (55%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A V++++GRTG+ G VTQV+V+ L+ D+ R+I RNV+GPV GDIL L E+EREAR ++
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVCEGDILTLLESEREARRLR 65
>sp|Q10421|RS28_SCHPO 40S RIBOSOMAL PROTEIN S28 (S33) >gi|7492335|pir||T41261 probable
40s ribosomal protein 28s - fission yeast
(Schizosaccharomyces pombe) >gi|7493318|pir||T38377
probable 40s ribosomal protein 28s - fission yeast
(Schizosaccharomyces pombe) >gi|1256529|emb|CAA94635.1|
(Z70691) ribosomal protein S28 [Schizosaccharomyces
pombe] >gi|3581915|emb|CAA20854.1| (AL031545) probable
40s ribosomal protein 28s [Schizosaccharomyces pombe]
Length = 68
Score = 66.3 bits (159), Expect = 4e-11
Identities = 33/60 (55%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A+VI+++GRTG+ G VTQV+V ++ D R I RNV+GPVR DIL+L E+EREAR ++
Sbjct: 11 AKVIKVLGRTGSRGGVTQVRVEFMD--DTSRSIIRNVKGPVREDDILVLLESEREARRLR 68
>pir||T45114 ribosomal protein S28 - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|1313916|dbj|BAA12712.1| (D85030)
ribosomal protein S33 homolog [Schizosaccharomyces
pombe]
Length = 61
Score = 66.3 bits (159), Expect = 4e-11
Identities = 33/60 (55%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A+VI+++GRTG+ G VTQV+V ++ D R I RNV+GPVR DIL+L E+EREAR ++
Sbjct: 4 AKVIKVLGRTGSRGGVTQVRVEFMD--DTSRSIIRNVKGPVREDDILVLLESEREARRLR 61
>pir||T48412 RIBOSOMAL PROTEIN S28-like - Arabidopsis thaliana
>gi|6143868|gb|AAF04415.1|AC010927_8 (AC010927)
putative ribosomal protein S28 [Arabidopsis thaliana]
>gi|7406395|emb|CAB85505.1| (AL162873) RIBOSOMAL
PROTEIN S28-like [Arabidopsis thaliana]
>gi|9758014|dbj|BAB08611.1| (AB005235) ribosomal
protein S28 [Arabidopsis thaliana]
Length = 64
Score = 65.6 bits (157), Expect = 6e-11
Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 3/60 (5%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A V++++GRTG+ G VTQV+V+ D R I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFT---DSDRYIMRNVKGPVREGDILTLLESEREARRLR 64
>sp|P34789|RS28_ARATH 40S RIBOSOMAL PROTEIN S28 >gi|409184|gb|AAA32862.1| (L09755)
ribosomal protein S28 [Arabidopsis thaliana]
>gi|10176962|dbj|BAB10282.1| (AB008266) 40S ribosomal
protein S28 [Arabidopsis thaliana]
Length = 64
Score = 65.2 bits (156), Expect = 8e-11
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 3/60 (5%)
Query: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
A V++++GRTG+ G VTQV+V+ D R I RNV+GPVR GD+L L E+EREAR ++
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFT---DSDRFIMRNVKGPVREGDVLTLLESEREARRLR 64
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23773383
Number of Sequences: 2977
Number of extensions: 780957
Number of successful extensions: 1900
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1879
Number of HSP's gapped (non-prelim): 21
length of query: 71
length of database: 189,106,746
effective HSP length: 50
effective length of query: 21
effective length of database: 159,182,396
effective search space: 3342830316
effective search space used: 3342830316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 156 (65.2 bits)