BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7207 (rps17E) DE:SSU ribosomal protein S17E (rps17E)
(67 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75128 ssu ribosomal protein s17e (rps17e) PAB7207 - Pyroco... 137 2e-32
sp|Q9YA67|R17E_AERPE 30S RIBOSOMAL PROTEIN S17E >gi|7521380|pir|... 78 1e-14
sp|O26894|R17E_METTH 30S RIBOSOMAL PROTEIN S17E >gi|7447272|pir|... 73 4e-13
gi|11498516 SSU ribosomal protein S17E (rps17E) [Archaeoglobus f... 73 5e-13
sp|P54026|R17E_METJA 30S RIBOSOMAL PROTEIN S17E >gi|2129262|pir|... 71 2e-12
pir||S63968 ribosomal protein S17.eR [validated] - Haloarcula ma... 66 5e-11
>pir||F75128 ssu ribosomal protein s17e (rps17e) PAB7207 - Pyrococcus abyssi
(strain Orsay) >gi|5458254|emb|CAB49743.1| (AJ248285)
SSU ribosomal protein S17E (rps17E) [Pyrococcus abyssi]
Length = 67
Score = 137 bits (341), Expect = 2e-32
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRM 60
MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRM
Sbjct: 1 MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRM 60
Query: 61 KEEGKIL 67
KEEGKIL
Sbjct: 61 KEEGKIL 67
>sp|Q9YA67|R17E_AERPE 30S RIBOSOMAL PROTEIN S17E >gi|7521380|pir||B72512 probable
ribosomal protein S17 APES067 - Aeropyrum pernix
(strain K1) >gi|5105770|dbj|BAA81082.1| (AP000063) 74aa
long hypothetical 30S ribosomal protein S17 [Aeropyrum
pernix]
Length = 74
Score = 77.6 bits (188), Expect = 1e-14
Identities = 37/65 (56%), Positives = 46/65 (69%)
Query: 1 MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRM 60
MGK+R +KR AR+L KYP+ FT DFEHNK+ V +L SKK+RN+IAGYIT LV M
Sbjct: 1 MGKVRIRLVKRTARKLLEKYPDLFTGDFEHNKRVVSQLIEYRSKKLRNQIAGYITHLVNM 60
Query: 61 KEEGK 65
+ K
Sbjct: 61 ASKRK 65
>sp|O26894|R17E_METTH 30S RIBOSOMAL PROTEIN S17E >gi|7447272|pir||C69207 ribosomal
protein S17 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621893|gb|AAB85303.1| (AE000858)
ribosomal protein S17 [Methanobacterium
thermoautotrophicum]
Length = 62
Score = 73.0 bits (176), Expect = 4e-13
Identities = 30/62 (48%), Positives = 47/62 (75%)
Query: 1 MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVRM 60
MG IR F+KR+A+E+ +P +FT DF+ NKK VEE + V++K +RN+IAGYIT+++
Sbjct: 1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQ 60
Query: 61 KE 62
++
Sbjct: 61 QK 62
>gi|11498516 SSU ribosomal protein S17E (rps17E) [Archaeoglobus fulgidus]
>gi|6647732|sp|O29351|R17E_ARCFU 30S RIBOSOMAL PROTEIN
S17E >gi|7447273|pir||G69363 SSU ribosomal protein S17E
(rps17E) homolog - Archaeoglobus fulgidus
>gi|2649699|gb|AAB90340.1| (AE001041) SSU ribosomal
protein S17E (rps17E) [Archaeoglobus fulgidus]
Length = 65
Score = 72.6 bits (175), Expect = 5e-13
Identities = 32/58 (55%), Positives = 43/58 (73%)
Query: 1 MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLV 58
MG ++ +IK +AREL KYP FT +F+ NK+ V ELTN+ SK +RNR+AGYIT+ V
Sbjct: 1 MGTVKPAYIKVIARELLKKYPEVFTGNFDENKRLVAELTNIQSKTVRNRVAGYITRRV 58
>sp|P54026|R17E_METJA 30S RIBOSOMAL PROTEIN S17E >gi|2129262|pir||F64330 ribosomal
protein S17B - Methanococcus jannaschii
>gi|1590978|gb|AAB98233.1| (U67480) SSU ribosomal
protein S17E [Methanococcus jannaschii]
Length = 63
Score = 70.6 bits (170), Expect = 2e-12
Identities = 33/59 (55%), Positives = 44/59 (73%)
Query: 1 MGKIRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITKLVR 59
MG+IRQ IKR A EL KY + FT DFE NK+ +EE+ +++K++RNRIAGYIT +R
Sbjct: 2 MGRIRQTLIKRTAMELIKKYRDLFTTDFETNKRVLEEVAQISTKRLRNRIAGYITHKMR 60
>pir||S63968 ribosomal protein S17.eR [validated] - Haloarcula marismortui
Length = 62
Score = 66.0 bits (158), Expect = 5e-11
Identities = 28/53 (52%), Positives = 38/53 (70%)
Query: 4 IRQGFIKRVARELFNKYPNEFTRDFEHNKKKVEELTNVTSKKIRNRIAGYITK 56
I+ ++K+ L +YP+ F DFEHNK VEELTN+ SK +RNRIAGY+T+
Sbjct: 2 IKPAYVKKTGTLLMERYPDAFGADFEHNKDVVEELTNIESKGVRNRIAGYVTR 54
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.138 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21871674
Number of Sequences: 2977
Number of extensions: 649261
Number of successful extensions: 3071
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3065
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 189,106,746
effective HSP length: 46
effective length of query: 21
effective length of database: 161,576,344
effective search space: 3393103224
effective search space used: 3393103224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 156 (65.2 bits)