BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7211 (rpl40E) DE:LSU ribosomal protein L40E (rpl40E)
         (51 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O74010|RL40_PYRHO 50S RIBOSOMAL PROTEIN L40E >gi|7519916|pir|...   116  3e-26
sp|P54058|RL40_METJA 50S RIBOSOMAL PROTEIN L40E >gi|2129257|pir|...    75  8e-14
gi|11499025 LSU ribosomal protein L40E (rpl40E) [Archaeoglobus f...    73  3e-13
sp|O26653|RL40_METTH 50S RIBOSOMAL PROTEIN L40E >gi|7482816|pir|...    69  8e-12

>sp|O74010|RL40_PYRHO 50S RIBOSOMAL PROTEIN L40E >gi|7519916|pir||B75130 lsu ribosomal
          protein l40e (rpl40e) PAB7211 - Pyrococcus abyssi
          (strain Orsay) >gi|7521375|pir||C71001 probable
          ribosomal protein L40 - Pyrococcus horikoshii
          >gi|3257728|dbj|BAA30411.1| (AP000006) 51aa long
          hypothetical 50S ribosomal protein L40 [Pyrococcus
          horikoshii] >gi|5458266|emb|CAB49755.1| (AJ248285) LSU
          ribosomal protein L40E (rpl40E) [Pyrococcus abyssi]
          Length = 51
          
 Score =  116 bits (288), Expect = 3e-26
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRGGGR 51
          MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRGGGR
Sbjct: 1  MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRGGGR 51


>sp|P54058|RL40_METJA 50S RIBOSOMAL PROTEIN L40E >gi|2129257|pir||C64388 ribosomal
          protein L40 - Methanococcus jannaschii
          >gi|1591423|gb|AAB98701.1| (U67517) LSU ribosomal
          protein L40E (CEP52) [Methanococcus jannaschii]
          Length = 47
          
 Score = 75.3 bits (182), Expect = 8e-14
 Identities = 32/45 (71%), Positives = 35/45 (77%)

Query: 4  FPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRG 48
          F EA  R+F K IC+RC A NPW A KCRKCGYK LRPKA+EPRG
Sbjct: 3  FEEAMKRLFMKKICMRCNARNPWRATKCRKCGYKGLRPKAKEPRG 47


>gi|11499025 LSU ribosomal protein L40E (rpl40E) [Archaeoglobus fulgidus]
          >gi|3914753|sp|O28842|RL40_ARCFU 50S RIBOSOMAL PROTEIN
          L40E >gi|7483859|pir||E69428 LSU ribosomal protein L40E
          (rpl40E) homolog - Archaeoglobus fulgidus
          >gi|2649137|gb|AAB89814.1| (AE001004) LSU ribosomal
          protein L40E (rpl40E) [Archaeoglobus fulgidus]
          Length = 49
          
 Score = 73.4 bits (177), Expect = 3e-13
 Identities = 32/48 (66%), Positives = 37/48 (76%)

Query: 1  MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRG 48
          MARFPEAEAR+F   IC+RC A NP  A  CRKCGYK LRPK++E +G
Sbjct: 1  MARFPEAEARLFNVKICMRCNARNPMKARVCRKCGYKGLRPKSKERKG 48


>sp|O26653|RL40_METTH 50S RIBOSOMAL PROTEIN L40E >gi|7482816|pir||B69173 ribosomal
          protein L40 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621629|gb|AAB85059.1| (AE000838)
          ribosomal protein L40 [Methanobacterium
          thermoautotrophicum]
          Length = 48
          
 Score = 68.7 bits (165), Expect = 8e-12
 Identities = 32/48 (66%), Positives = 36/48 (74%)

Query: 1  MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRG 48
          MARF EAE R+F   ICL+C A NP  A+ CRKCGYK LR KA+EPRG
Sbjct: 1  MARFEEAENRLFNIKICLKCNARNPPTAKTCRKCGYKGLRYKAKEPRG 48


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.143    0.494 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21105975
Number of Sequences: 2977
Number of extensions: 599296
Number of successful extensions: 2331
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2327
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 189,106,746
effective HSP length: 30
effective length of query: 21
effective length of database: 171,152,136
effective search space: 3594194856
effective search space used: 3594194856
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)