BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7213 (PAB7213) DE:Hypothetical protein
         (60 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75130 hypothetical protein PAB7213 - Pyrococcus abyssi (st...   134  9e-32
gi|11498137 conserved hypothetical protein [Archaeoglobus fulgid...    85  9e-17
sp|O27362|YD07_METTH HYPOTHETICAL PROTEIN MTH1307 >gi|7482382|pi...    79  5e-15
sp|P81303|Y11A_METJA HYPOTHETICAL PROTEIN MJ0116.1 >gi|2826246|g...    79  7e-15
gb|AAK41315.1| Conserved hypothetical protein [Sulfolobus solfat...    69  4e-12

>pir||H75130 hypothetical protein PAB7213 - Pyrococcus abyssi (strain Orsay)
          >gi|5458272|emb|CAB49761.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 60
          
 Score =  134 bits (335), Expect = 9e-32
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MRFRIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKEK 60
          MRFRIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKEK
Sbjct: 1  MRFRIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKEK 60


>gi|11498137 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|3219893|sp|O29724|Y526_ARCFU HYPOTHETICAL PROTEIN
          AF0526 >gi|7483022|pir||F69315 conserved hypothetical
          protein AF0526 - Archaeoglobus fulgidus
          >gi|2650110|gb|AAB90724.1| (AE001068) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 59
          
 Score = 85.0 bits (207), Expect = 9e-17
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 1  MRFRIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKREL 52
          M+  +RKC KCGRYTLKE CPVCGE+T +  PPRFS EDPYG+YRR+L++E+
Sbjct: 1  MKVLMRKCGKCGRYTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEI 52


>sp|O27362|YD07_METTH HYPOTHETICAL PROTEIN MTH1307 >gi|7482382|pir||F69040 hypothetical
          protein MTH1307 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2622412|gb|AAB85785.1| (AE000895)
          unknown [Methanobacterium thermoautotrophicum]
          Length = 59
          
 Score = 79.2 bits (192), Expect = 5e-15
 Identities = 33/56 (58%), Positives = 41/56 (72%)

Query: 4  RIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKE 59
          ++++C  CG YTLKE CP CG +T V +PP+FSPED YG YRR+LKREL   G  E
Sbjct: 2  KMKRCRSCGEYTLKEVCPHCGGRTGVIYPPKFSPEDKYGAYRRKLKRELYSRGSGE 57


>sp|P81303|Y11A_METJA HYPOTHETICAL PROTEIN MJ0116.1 >gi|2826246|gb|AAB98109.1| (U67469)
          conserved hypothetical protein [Methanococcus
          jannaschii]
          Length = 60
          
 Score = 78.8 bits (191), Expect = 7e-15
 Identities = 34/59 (57%), Positives = 42/59 (70%)

Query: 1  MRFRIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKE 59
          +  R++KCPKCG YTLKE CP CGEKT +  PP+FS ED +G+YRR LKR L    + E
Sbjct: 2  VEMRMKKCPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKNKAE 60


>gb|AAK41315.1| Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 56
          
 Score = 69.5 bits (167), Expect = 4e-12
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 1  MRFRIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKR 50
          M++++RKCPK   YT K+TC +CG KT + HP RFSPED Y +YR  LK+
Sbjct: 1  MKWKMRKCPKDNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKK 50


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.145    0.472 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25711196
Number of Sequences: 2977
Number of extensions: 882320
Number of successful extensions: 8561
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8556
Number of HSP's gapped (non-prelim): 5
length of query: 60
length of database: 189,106,746
effective HSP length: 39
effective length of query: 21
effective length of database: 165,765,753
effective search space: 3481080813
effective search space used: 3481080813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 156 (65.2 bits)