BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7217 (PAB7217) DE:Hypothetical protein
         (95 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75133 hypothetical protein PAB7217 - Pyrococcus abyssi (st...   187  3e-47
pir||D71075 hypothetical protein PHS036 - Pyrococcus horikoshii ...   160  4e-39

>pir||A75133 hypothetical protein PAB7217 - Pyrococcus abyssi (strain Orsay)
          >gi|5458289|emb|CAB49778.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 95
          
 Score =  187 bits (469), Expect = 3e-47
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MSARGDLIRILGEIEEKINELKMDGFDPDIILFGKEAYNFFSALLKSETGEEGPFTQVSN 60
          MSARGDLIRILGEIEEKINELKMDGFDPDIILFGKEAYNFFSALLKSETGEEGPFTQVSN
Sbjct: 1  MSARGDLIRILGEIEEKINELKMDGFDPDIILFGKEAYNFFSALLKSETGEEGPFTQVSN 60

Query: 61 VRIEILDELGNDAVVIDSKVLGLVPGAAKRIRIVK 95
          VRIEILDELGNDAVVIDSKVLGLVPGAAKRIRIVK
Sbjct: 61 VRIEILDELGNDAVVIDSKVLGLVPGAAKRIRIVK 95


>pir||D71075 hypothetical protein PHS036 - Pyrococcus horikoshii
          >gi|3257715|dbj|BAA30398.1| (AP000005) 96aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 96
          
 Score =  160 bits (400), Expect = 4e-39
 Identities = 76/95 (80%), Positives = 88/95 (92%)

Query: 1  MSARGDLIRILGEIEEKINELKMDGFDPDIILFGKEAYNFFSALLKSETGEEGPFTQVSN 60
          MS RGDLIRIL +IEEKINELKMDG+ PD+ILFGKEAYNFFS+++K ETGEEGPFT+VSN
Sbjct: 1  MSTRGDLIRILSDIEEKINELKMDGYRPDVILFGKEAYNFFSSIVKVETGEEGPFTEVSN 60

Query: 61 VRIEILDELGNDAVVIDSKVLGLVPGAAKRIRIVK 95
          +R+EIL ELG DAV+IDSK+LGL PGAAKRIRI+K
Sbjct: 61 LRVEILSELGKDAVIIDSKLLGLSPGAAKRIRIIK 95


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.143    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33287759
Number of Sequences: 2977
Number of extensions: 1193253
Number of successful extensions: 2949
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2947
Number of HSP's gapped (non-prelim): 2
length of query: 95
length of database: 189,106,746
effective HSP length: 53
effective length of query: 42
effective length of database: 157,386,935
effective search space: 6610251270
effective search space used: 6610251270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 158 (66.0 bits)