BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7218 (PAB7218) DE:Hypothetical protein
(96 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75134 hypothetical protein PAB7218 - Pyrococcus abyssi (st... 194 2e-49
gi|11497931 conserved hypothetical protein [Archaeoglobus fulgid... 71 4e-12
gi|11497927 conserved hypothetical protein [Archaeoglobus fulgid... 70 7e-12
gi|11499795 conserved hypothetical protein, C-terminus [Archaeog... 68 3e-11
gi|10954518 M. jannaschii predicted coding region MJECL30 [Metha... 68 3e-11
gi|11498691 conserved hypothetical protein [Archaeoglobus fulgid... 67 4e-11
>pir||B75134 hypothetical protein PAB7218 - Pyrococcus abyssi (strain Orsay)
>gi|5458298|emb|CAB49787.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 96
Score = 194 bits (488), Expect = 2e-49
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MRLIFEEHYGEYKLKKLKKSLSQKFEIYRAYLRNLNRLIVVIPAPSDVSKLTYIMEKYSL 60
MRLIFEEHYGEYKLKKLKKSLSQKFEIYRAYLRNLNRLIVVIPAPSDVSKLTYIMEKYSL
Sbjct: 1 MRLIFEEHYGEYKLKKLKKSLSQKFEIYRAYLRNLNRLIVVIPAPSDVSKLTYIMEKYSL 60
Query: 61 LPNDALIVLTCKVYGINKIATFDSDFENVDFLEKLP 96
LPNDALIVLTCKVYGINKIATFDSDFENVDFLEKLP
Sbjct: 61 LPNDALIVLTCKVYGINKIATFDSDFENVDFLEKLP 96
>gi|11497931 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450185|pir||E69289 conserved hypothetical protein
AF0317 - Archaeoglobus fulgidus
>gi|2650319|gb|AAB90917.1| (AE001083) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 149
Score = 70.6 bits (170), Expect = 4e-12
Identities = 35/72 (48%), Positives = 49/72 (67%), Gaps = 2/72 (2%)
Query: 22 SQKFEIYRAYLRNLNRLIVVIPAPSDVSKLTYIMEKYSLLPNDALIVLTCKVYGINKIAT 81
+++ E + + +R+LN I V+ + +++ IM K+ LLPNDALI TC+ YGI KIAT
Sbjct: 76 AKEIEAFESVIRDLN--ITVLRDYQNPREISEIMSKFKLLPNDALIAATCRHYGIRKIAT 133
Query: 82 FDSDFENVDFLE 93
FD DF VDFLE
Sbjct: 134 FDEDFRRVDFLE 145
>gi|11497927 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450183|pir||A69289 conserved hypothetical protein
AF0313 - Archaeoglobus fulgidus
>gi|2650322|gb|AAB90920.1| (AE001083) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 150
Score = 69.9 bits (168), Expect = 7e-12
Identities = 42/96 (43%), Positives = 54/96 (55%), Gaps = 15/96 (15%)
Query: 6 EEHYGEYKLKKLKKSLSQKFEIYRAYLRN--------LNRLIVVIPAPSDVSKLTYIMEK 57
E+HY ++ K L + +Y L+N L+ ++P PS + IME+
Sbjct: 58 EKHY------EVIKKLKEDSNVYEKSLKNAKLFYSSILHDGFQILPLPS-WDLVLEIMER 110
Query: 58 YSLLPNDALIVLTCKVYGINKIATFDSDFENVDFLE 93
Y LLPNDALI TCK YGI KIATFD DF VDFL+
Sbjct: 111 YRLLPNDALIAATCKHYGIKKIATFDEDFRRVDFLQ 146
>gi|11499795 conserved hypothetical protein, C-terminus [Archaeoglobus
fulgidus] >gi|7450189|pir||E69526 conserved
hypothetical protein, C-terminus AF2213 - Archaeoglobus
fulgidus >gi|2648325|gb|AAB89055.1| (AE000953)
conserved hypothetical protein, C-terminus
[Archaeoglobus fulgidus]
Length = 72
Score = 67.9 bits (163), Expect = 3e-11
Identities = 34/62 (54%), Positives = 38/62 (60%)
Query: 32 LRNLNRLIVVIPAPSDVSKLTYIMEKYSLLPNDALIVLTCKVYGINKIATFDSDFENVDF 91
L N I V+ D+ + + EKY LPNDALI TCK YGI KIATFD DF VDF
Sbjct: 7 LHNFYDEIYVVQDSRDLELIKSVAEKYKSLPNDALIAATCKHYGIKKIATFDEDFRRVDF 66
Query: 92 LE 93
LE
Sbjct: 67 LE 68
>gi|10954518 M. jannaschii predicted coding region MJECL30 [Methanococcus
jannaschii] >gi|2496230|sp|Q60288|YZ30_METJA
HYPOTHETICAL PROTEIN MJECL30 >gi|2129044|pir||E64513
hypothetical protein MJECL30 - Methanococcus jannaschii
plasmid pURB800 >gi|1522666|gb|AAC37100.1| (L77118) M.
jannaschii predicted coding region MJECL30
[Methanococcus jannaschii]
Length = 153
Score = 67.5 bits (162), Expect = 3e-11
Identities = 37/83 (44%), Positives = 54/83 (64%), Gaps = 6/83 (7%)
Query: 17 LKKSLSQKFEIYRAYLRNLNRLIV-----VIPAPSDVSKLT-YIMEKYSLLPNDALIVLT 70
LKK+L++ +Y ++++I ++ +V KL I +KY+LL NDA+I+ T
Sbjct: 67 LKKNLNRYSWVYEEVREKIDKMIKMNYLKILDTNWEVLKLAPEIGKKYNLLTNDAIIIAT 126
Query: 71 CKVYGINKIATFDSDFENVDFLE 93
CK Y INK+ATFDSDFE VDF+E
Sbjct: 127 CKYYRINKLATFDSDFEKVDFIE 149
>gi|11498691 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450187|pir||B69386 conserved hypothetical protein
AF1091 - Archaeoglobus fulgidus
>gi|2649497|gb|AAB90151.1| (AE001028) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 139
Score = 67.1 bits (161), Expect = 4e-11
Identities = 31/43 (72%), Positives = 34/43 (78%)
Query: 51 LTYIMEKYSLLPNDALIVLTCKVYGINKIATFDSDFENVDFLE 93
LT ++KY LLPNDALI TCK YGINKIATFD DF V+FLE
Sbjct: 93 LTKFIKKYKLLPNDALIAATCKHYGINKIATFDEDFRRVEFLE 135
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32919717
Number of Sequences: 2977
Number of extensions: 1093846
Number of successful extensions: 3343
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3340
Number of HSP's gapped (non-prelim): 6
length of query: 96
length of database: 189,106,746
effective HSP length: 52
effective length of query: 44
effective length of database: 157,985,422
effective search space: 6951358568
effective search space used: 6951358568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 158 (66.0 bits)