BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7224 (rd) DE:rubredoxin (rd)
(53 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75136 rubredoxin PAB7224 [similarity] - Pyrococcus abyssi ... 123 2e-28
pir||RUPF rubredoxin [validated] - Pyrococcus furiosus >gi|67297... 114 1e-25
pdb|1BQ9|A Chain A, Rubredoxin (Formyl Methionine Mutant) From P... 113 2e-25
sp|P24297|RUBR_PYRFU RUBREDOXIN (RD) >gi|6729721|pdb|1BRF|A Chai... 113 2e-25
pir||H72348 rubredoxin - Thermotoga maritima (strain MSB8) >gi|4... 98 1e-20
emb|CAA72620.1| (Y11875) rubredoxin [Clostridium butyricum] 98 2e-20
pdb|1QCV|A Chain A, Rubredoxin Variant (Pfrd-Xc4) Folds Without ... 97 2e-20
gi|11498486 rubredoxin (rd-1) [Archaeoglobus fulgidus] >gi|74308... 96 4e-20
gi|11498945 rubredoxin (rd-2) [Archaeoglobus fulgidus] >gi|74308... 95 8e-20
pdb|4RXN| Rubredoxin (Oxidized, Fe(III)) (Unconstrained Model)... 91 1e-18
sp|P00268|RUBR_CLOPA RUBREDOXIN (RD) >gi|1070424|pir||RUCLEP rub... 90 3e-18
pdb|1BFY| Solution Structure Of Reduced Clostridium Pasteurian... 90 3e-18
sp|P00269|RUBR_DESVH RUBREDOXIN (RD) >gi|65799|pir||RUDV rubredo... 90 4e-18
sp|P15412|RUBR_DESVM RUBREDOXIN (RD) >gi|320090|pir||JX0241 rubr... 90 4e-18
pdb|1RB9| Rubredoxin From Desulfovibrio Vulgaris Refined Aniso... 90 4e-18
sp|P19500|RUBR_CLOTS RUBREDOXIN (RD) >gi|98646|pir||A33173 rubre... 88 1e-17
pdb|1B13|A Chain A, Clostridium Pasteurianum Rubredoxin G10a Mutant 88 1e-17
pdb|1B2J|A Chain A, Clostridium Pasteurianum Rubredoxin G43a Mutant 88 1e-17
sp|P14072|RUBR_CLOPE RUBREDOXIN (RD) >gi|80528|pir||JU0074 rubre... 87 3e-17
pdb|1BE7| Clostridium Pasteurianum Rubredoxin C42s Mutant 86 4e-17
sp|P56263|RUBR_HELMO RUBREDOXIN >gi|2148042|pir||S65620 rubredox... 85 9e-17
emb|CAB41597.1| (AJ238458) rubredoxin [Clostridium cellulolyticum] 84 2e-16
pdb|1B2O|A Chain A, Clostridium Pasteurianum Rubredoxin G10vg43a... 84 2e-16
sp|P23474|RUBR_CLOST RUBREDOXIN (RD) >gi|98633|pir||A33182 rubre... 84 2e-16
sp|P00270|RUBR_DESGI RUBREDOXIN (RD) >gi|65800|pir||RUDVEG rubre... 83 3e-16
pdb|1RDG| Rubredoxin 83 3e-16
pir||B69075 rubredoxin - Methanobacterium thermoautotrophicum (s... 82 6e-16
gb|AAG00801.1| (AF202316) rubredoxin Rd [Moorella thermoacetica] 82 6e-16
sp|P42453|RUBR_ACICA RUBREDOXIN (RD) >gi|2117421|pir||I39520 rub... 81 1e-15
gb|AAG00803.1| (AF202316) high molecular weight rubredoxin [Moor... 81 2e-15
pir||A59199 hybrid cluster [4Fe-2S-3O] protein MTH1453 [similari... 80 2e-15
sp|P14071|RUBR_BUTME RUBREDOXIN (RD) >gi|80482|pir||JU0127 rubre... 80 2e-15
pir||H81133 rubredoxin NMB0993 [imported] - Neisseria meningitid... 80 3e-15
dbj|BAA76336.1| (AB024936) rubredoxin [Rhodococcus sp. CIR2] 79 7e-15
sp|P09947|RUBR_CHLLT RUBREDOXIN (RD) >gi|79592|pir||A27537 rubre... 78 2e-14
emb|CAA67881.1| (X99543) rubredoxin [Desulfoarculus baarsii] 77 2e-14
pir||A82977 rubredoxin PA5351 [imported] - Pseudomonas aeruginos... 76 4e-14
pir||H82976 rubredoxin PA5350 [imported] - Pseudomonas aeruginos... 76 6e-14
sp|P00271|RUBR_MEGEL RUBREDOXIN (RD) >gi|65802|pir||RUME rubredo... 74 2e-13
sp|P00272|RUB2_PSEOL RUBREDOXIN 2 >gi|418615|pir||RUPSEO rubredo... 73 4e-13
pir||B82814 rubredoxin XF0379 [imported] - Xylella fastidiosa (s... 73 5e-13
pir||D64392 rubredoxin - Methanococcus jannaschii >gi|1591453|gb... 71 2e-12
pir||D70593 probable rubB protein - Mycobacterium tuberculosis (... 71 2e-12
emb|CAB51049.1| (AJ233397) rubredoxin 2 [Pseudomonas putida] 71 2e-12
pir||G69073 rubredoxin - Methanobacterium thermoautotrophicum (s... 70 3e-12
gb|AAB39992.1| (U82323) rubredoxin-like protein [Desulfovibrio v... 68 1e-11
pir||G64391 rubredoxin - Methanococcus jannaschii >gi|1591450|gb... 66 7e-11
gb|AAD25628.1|AC005287_30 (AC005287) Hypothetical protein [Arabi... 66 7e-11
>pir||E75136 rubredoxin PAB7224 [similarity] - Pyrococcus abyssi (strain
Orsay) >gi|5458317|emb|CAB49806.1| (AJ248285)
rubredoxin (rd) [Pyrococcus abyssi]
Length = 53
Score = 123 bits (307), Expect = 2e-28
Identities = 52/53 (98%), Positives = 53/53 (99%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+AKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE
Sbjct: 1 MAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
>pir||RUPF rubredoxin [validated] - Pyrococcus furiosus
>gi|6729714|pdb|1BQ8|A Chain A, Rubredoxin (Methionine
Mutant) From Pyrococcus Furiosus
>gi|6066243|gb|AAF03228.1|AF156097_8 (AF156097)
rubredoxin [Pyrococcus furiosus]
Length = 54
Score = 114 bits (282), Expect = 1e-25
Identities = 46/53 (86%), Positives = 51/53 (95%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+AKW CKICGYIYDED GDPDNGISPGTKFE+LPDDWVCP+CGAPKSEFE++E
Sbjct: 1 MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 53
>pdb|1BQ9|A Chain A, Rubredoxin (Formyl Methionine Mutant) From Pyrococcus
Furiosus
Length = 54
Score = 113 bits (281), Expect = 2e-25
Identities = 46/52 (88%), Positives = 50/52 (95%)
Query: 2 AKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
AKW CKICGYIYDED GDPDNGISPGTKFE+LPDDWVCP+CGAPKSEFE++E
Sbjct: 2 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 53
>sp|P24297|RUBR_PYRFU RUBREDOXIN (RD) >gi|6729721|pdb|1BRF|A Chain A, Rubredoxin (Wild
Type) From Pyrococcus Furiosus >gi|442697|pdb|1CAA|
Rubredoxin (Oxidized) >gi|442698|pdb|1CAD| Rubredoxin
(Reduced) >gi|443341|pdb|1ZRP| Rubredoxin
(Zn-Substituted) (Nmr, 40 Structures)
>gi|238348|gb|AAB20233.1| rubredoxin, Rd [Pyrococcus
furiosus, DSM 3638, Peptide, 53 aa]
Length = 53
Score = 113 bits (281), Expect = 2e-25
Identities = 46/52 (88%), Positives = 50/52 (95%)
Query: 2 AKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
AKW CKICGYIYDED GDPDNGISPGTKFE+LPDDWVCP+CGAPKSEFE++E
Sbjct: 1 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 52
>pir||H72348 rubredoxin - Thermotoga maritima (strain MSB8)
>gi|4981182|gb|AAD35743.1|AE001739_6 (AE001739)
rubredoxin [Thermotoga maritima]
Length = 53
Score = 97.9 bits (240), Expect = 1e-20
Identities = 38/51 (74%), Positives = 45/51 (87%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+RCK+CGYIYD ++GDPD+GI PGT FEDLPDDWVCPLCGA K +FE +E
Sbjct: 3 KYRCKLCGYIYDPEQGDPDSGIEPGTPFEDLPDDWVCPLCGASKEDFEPVE 53
>emb|CAA72620.1| (Y11875) rubredoxin [Clostridium butyricum]
Length = 53
Score = 97.5 bits (239), Expect = 2e-20
Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51
K+ C +CGYIYDE GDPDNG++PGTKFED+PDDWVCPLCG PKS+FE+
Sbjct: 3 KYICTVCGYIYDEAAGDPDNGVAPGTKFEDIPDDWVCPLCGVPKSDFEK 51
>pdb|1QCV|A Chain A, Rubredoxin Variant (Pfrd-Xc4) Folds Without Iron
Length = 53
Score = 97.1 bits (238), Expect = 2e-20
Identities = 41/51 (80%), Positives = 45/51 (87%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
KW KI GYIYDED GDPDNGISPGTKFE+LPDDWV P+ GAPKSEFE++E
Sbjct: 2 KWVLKITGYIYDEDAGDPDNGISPGTKFEELPDDWVAPITGAPKSEFEKLE 52
>gi|11498486 rubredoxin (rd-1) [Archaeoglobus fulgidus]
>gi|7430813|pir||H69359 rubredoxin (rd-1) homolog -
Archaeoglobus fulgidus >gi|2649724|gb|AAB90363.1|
(AE001043) rubredoxin (rd-1) [Archaeoglobus fulgidus]
Length = 53
Score = 96.3 bits (236), Expect = 4e-20
Identities = 37/53 (69%), Positives = 48/53 (89%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+AK++C ICGY+YDE EGDP++ +SPGTK+EDLPDDWVCP+CGA K +FE+IE
Sbjct: 1 MAKYQCTICGYVYDEAEGDPESDVSPGTKWEDLPDDWVCPVCGATKDQFEKIE 53
>gi|11498945 rubredoxin (rd-2) [Archaeoglobus fulgidus]
>gi|7430811|pir||D69418 rubredoxin (rd-2) homolog -
Archaeoglobus fulgidus >gi|2649239|gb|AAB89910.1|
(AE001011) rubredoxin (rd-2) [Archaeoglobus fulgidus]
Length = 73
Score = 95.2 bits (233), Expect = 8e-20
Identities = 37/53 (69%), Positives = 46/53 (85%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+AK+ C++CGY+YDE EGDPDN I GTK+EDLPDDWVCP+CGA K +FE+IE
Sbjct: 20 MAKYECQVCGYVYDEAEGDPDNDIPAGTKWEDLPDDWVCPVCGASKDQFEKIE 72
>pdb|4RXN| Rubredoxin (Oxidized, Fe(III)) (Unconstrained Model)
>gi|231175|pdb|5RXN| Rubredoxin (Oxidized, Fe(III))
(Constrained Model)
Length = 54
Score = 91.3 bits (223), Expect = 1e-18
Identities = 33/51 (64%), Positives = 43/51 (83%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +CGYIYD ++GDPD+G++PGT F+D+PDDWVCPLCG K EFE +E
Sbjct: 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEEVE 53
>sp|P00268|RUBR_CLOPA RUBREDOXIN (RD) >gi|1070424|pir||RUCLEP rubredoxin [validated] -
Clostridium pasteurianum >gi|1421143|pdb|1IRO|
Rubredoxin (Oxidized, Fe(Iii)) At 1.1 Angstroms
Resolution >gi|1421138|pdb|1IRN| Rubredoxin
(Zn-Substituted) At 1.2 Angstroms Resolution
>gi|144909|gb|AAA23279.1| (M60116) rubredoxin
[Clostridium pasteurianum]
Length = 54
Score = 90.1 bits (220), Expect = 3e-18
Identities = 32/51 (62%), Positives = 43/51 (83%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +CGYIY+ ++GDPDNG++PGT F+D+PDDWVCPLCG K +FE +E
Sbjct: 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE 53
>pdb|1BFY| Solution Structure Of Reduced Clostridium Pasteurianum
Rubredoxin, Nmr, 20 Structures
Length = 54
Score = 90.1 bits (220), Expect = 3e-18
Identities = 32/51 (62%), Positives = 43/51 (83%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +CGYIY+ ++GDPDNG++PGT F+D+PDDWVCPLCG K +FE +E
Sbjct: 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE 53
>sp|P00269|RUBR_DESVH RUBREDOXIN (RD) >gi|65799|pir||RUDV rubredoxin [validated] -
Desulfovibrio vulgaris (strain Hildenborough)
>gi|443567|pdb|8RXN|A Chain A, Rubredoxin
>gi|231271|pdb|7RXN| Rubredoxin
>gi|145116|gb|AAA23381.1| (M81168) rubredoxin
[Desulfovibrio vulgaris] >gi|145120|gb|AAA21088.1|
(M21679) rubredoxin [Desulfovibrio vulgaris]
>gi|758677|gb|AAA64798.1| (M28848) rubredoxin
[Desulfovibrio vulgaris]
Length = 52
Score = 89.7 bits (219), Expect = 4e-18
Identities = 35/48 (72%), Positives = 40/48 (82%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +CGY YD EGDPDNG+ PGT F+DLP DWVCP+CGAPKSEFE
Sbjct: 3 KYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFE 50
>sp|P15412|RUBR_DESVM RUBREDOXIN (RD) >gi|320090|pir||JX0241 rubredoxin - Desulfovibrio
vulgaris (strain Miyazaki) >gi|5107733|pdb|2RDV|A Chain
A, Rubredoxin From Desulfovibrio Vulgaris Miyazaki F,
Monoclinic Crystal Form >gi|5107734|pdb|2RDV|B Chain B,
Rubredoxin From Desulfovibrio Vulgaris Miyazaki F,
Monoclinic Crystal Form >gi|5107735|pdb|2RDV|C Chain C,
Rubredoxin From Desulfovibrio Vulgaris Miyazaki F,
Monoclinic Crystal Form >gi|5107680|pdb|1RDV|
Rubredoxin From Desulfovibrio Vulgaris Miyazaki F,
Trigonal Crystal Form >gi|1020404|dbj|BAA11175.1|
(D76419) rubredoxin [Desulfovibrio vulgaris]
>gi|226794|prf||1606208A rubredoxin [Desulfovibrio
vulgaris]
Length = 52
Score = 89.7 bits (219), Expect = 4e-18
Identities = 35/48 (72%), Positives = 40/48 (82%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +CGY YD EGDPDNG+ PGT FED+P DWVCP+CGAPKSEFE
Sbjct: 3 KYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFE 50
>pdb|1RB9| Rubredoxin From Desulfovibrio Vulgaris Refined Anisotropically
At 0.92 Angstroms Resolution
Length = 53
Score = 89.7 bits (219), Expect = 4e-18
Identities = 35/48 (72%), Positives = 40/48 (82%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +CGY YD EGDPDNG+ PGT F+DLP DWVCP+CGAPKSEFE
Sbjct: 4 KYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFE 51
>sp|P19500|RUBR_CLOTS RUBREDOXIN (RD) >gi|98646|pir||A33173 rubredoxin [validated] -
Clostridium thermosaccharolyticum
Length = 52
Score = 87.8 bits (214), Expect = 1e-17
Identities = 34/50 (68%), Positives = 39/50 (78%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERI 52
KW+C +CGYIYD + GDP I PGTKFEDLPDDWVCP CG K +FE+I
Sbjct: 3 KWQCTVCGYIYDPEVGDPTQNIPPGTKFEDLPDDWVCPDCGVGKDQFEKI 52
>pdb|1B13|A Chain A, Clostridium Pasteurianum Rubredoxin G10a Mutant
Length = 54
Score = 87.8 bits (214), Expect = 1e-17
Identities = 31/51 (60%), Positives = 42/51 (81%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +C YIY+ ++GDPDNG++PGT F+D+PDDWVCPLCG K +FE +E
Sbjct: 3 KYTCTVCAYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE 53
>pdb|1B2J|A Chain A, Clostridium Pasteurianum Rubredoxin G43a Mutant
Length = 54
Score = 87.8 bits (214), Expect = 1e-17
Identities = 31/51 (60%), Positives = 42/51 (81%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +CGYIY+ ++GDPDNG++PGT F+D+PDDWVCPLC K +FE +E
Sbjct: 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCAVGKDQFEEVE 53
>sp|P14072|RUBR_CLOPE RUBREDOXIN (RD) >gi|80528|pir||JU0074 rubredoxin - Clostridium
perfringens
Length = 54
Score = 86.6 bits (211), Expect = 3e-17
Identities = 33/51 (64%), Positives = 40/51 (77%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +CGYIYD GDPDNG+ PGT+F+D+PDDWVCPLCG KS+F E
Sbjct: 3 KFICDVCGYIYDPAVGDPDNGVEPGTEFKDIPDDWVCPLCGVDKSQFSETE 53
>pdb|1BE7| Clostridium Pasteurianum Rubredoxin C42s Mutant
Length = 54
Score = 86.2 bits (210), Expect = 4e-17
Identities = 31/51 (60%), Positives = 42/51 (81%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +CGYIY+ ++GDPDNG++PGT F+D+PDDWVCPL G K +FE +E
Sbjct: 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLSGVGKDQFEEVE 53
>sp|P56263|RUBR_HELMO RUBREDOXIN >gi|2148042|pir||S65620 rubredoxin - Heliobacillus
mobilis >gi|998902|gb|AAB34046.1| rubredoxin, Rd=small
nonheme iron protein [Heliobacillus mobilis, Peptide,
52 aa]
Length = 52
Score = 85.0 bits (207), Expect = 9e-17
Identities = 33/48 (68%), Positives = 39/48 (80%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +CGY+YD +GDPD+GI+PGT FEDLP DWVCPLCG K EFE
Sbjct: 3 KYGCLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEFE 50
>emb|CAB41597.1| (AJ238458) rubredoxin [Clostridium cellulolyticum]
Length = 52
Score = 84.3 bits (205), Expect = 2e-16
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51
C +CGY+YD +EGDPD GI+PGT FED+P+DWVCPLCG K FE+
Sbjct: 6 CTVCGYVYDPEEGDPDGGIAPGTAFEDIPEDWVCPLCGVGKDLFEK 51
>pdb|1B2O|A Chain A, Clostridium Pasteurianum Rubredoxin G10vg43a Mutant
>gi|5107459|pdb|1B2O|B Chain B, Clostridium
Pasteurianum Rubredoxin G10vg43a Mutant
Length = 54
Score = 84.3 bits (205), Expect = 2e-16
Identities = 30/51 (58%), Positives = 41/51 (79%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C +C YIY+ ++GDPDNG++PGT F+D+PDDWVCPLC K +FE +E
Sbjct: 3 KYTCTVCVYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCAVGKDQFEEVE 53
>sp|P23474|RUBR_CLOST RUBREDOXIN (RD) >gi|98633|pir||A33182 rubredoxin - Clostridium
sticklandii
Length = 53
Score = 83.9 bits (204), Expect = 2e-16
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
+ K+ C +CGY+YD + GDPDN I+PGT F+D+P+DWVCPLCG K +FE
Sbjct: 1 MTKYVCTVCGYVYDPEVGDPDNNINPGTSFQDIPEDWVCPLCGVGKDQFE 50
>sp|P00270|RUBR_DESGI RUBREDOXIN (RD) >gi|65800|pir||RUDVEG rubredoxin [validated] -
Desulfovibrio gigas
Length = 52
Score = 83.5 bits (203), Expect = 3e-16
Identities = 32/46 (69%), Positives = 37/46 (79%)
Query: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51
C +CGY YD +GDPD+GI PGTKFEDLPDDW CP+CGA K FE+
Sbjct: 6 CTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK 51
>pdb|1RDG| Rubredoxin
Length = 53
Score = 83.5 bits (203), Expect = 3e-16
Identities = 32/46 (69%), Positives = 37/46 (79%)
Query: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51
C +CGY YD +GDPD+GI PGTKFEDLPDDW CP+CGA K FE+
Sbjct: 7 CTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK 52
>pir||B69075 rubredoxin - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621198|gb|AAB84662.1| (AE000804) rubredoxin
[Methanobacterium thermoautotrophicum]
Length = 53
Score = 82.3 bits (200), Expect = 6e-16
Identities = 31/51 (60%), Positives = 42/51 (81%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C++CGYIYD +EGDP +GI GT FEDLPDDWVCP+CG K +F++++
Sbjct: 3 KYVCQMCGYIYDPEEGDPVSGIEAGTPFEDLPDDWVCPVCGVGKDQFKKMD 53
>gb|AAG00801.1| (AF202316) rubredoxin Rd [Moorella thermoacetica]
Length = 53
Score = 82.3 bits (200), Expect = 6e-16
Identities = 32/48 (66%), Positives = 37/48 (76%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +C Y+YD EGDPDNGI+PGT F DLP+DWVCPLC A K FE
Sbjct: 3 KYSCTVCDYVYDPAEGDPDNGIAPGTPFADLPEDWVCPLCSAGKEAFE 50
>sp|P42453|RUBR_ACICA RUBREDOXIN (RD) >gi|2117421|pir||I39520 rubredoxin -
Acinetobacter calcoaceticus >gi|599606|emb|CAA86925.1|
(Z46863) rubredoxin [Acinetobacter sp. ADP1]
Length = 54
Score = 81.1 bits (197), Expect = 1e-15
Identities = 32/51 (62%), Positives = 41/51 (79%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K++C +CG+IYDE EG P +GI+PGTK+ED+PDDW CP CG K +FE IE
Sbjct: 3 KYQCIVCGWIYDEAEGWPQDGIAPGTKWEDIPDDWTCPDCGVSKVDFEMIE 53
>gb|AAG00803.1| (AF202316) high molecular weight rubredoxin [Moorella
thermoacetica]
Length = 229
Score = 80.8 bits (196), Expect = 2e-15
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERI 52
K++C IC Y+YD +GDP++GI+PGT F DLP+DW CP+CGA K FE+I
Sbjct: 180 KYQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPICGAGKDAFEQI 229
>pir||A59199 hybrid cluster [4Fe-2S-3O] protein MTH1453 [similarity] -
Methanobacterium thermoautotrophicum (strain Delta H)
Length = 491
Score = 80.4 bits (195), Expect = 2e-15
Identities = 30/48 (62%), Positives = 38/48 (78%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+RCK+C YIYD + GDP +GI PGT FE+LPDDW+CP+C K +FE
Sbjct: 2 KYRCKVCDYIYDPEVGDPRSGIEPGTPFEELPDDWLCPVCNVGKDQFE 49
>sp|P14071|RUBR_BUTME RUBREDOXIN (RD) >gi|80482|pir||JU0127 rubredoxin -
"Butyribacterium methylotrophicum
Length = 53
Score = 80.4 bits (195), Expect = 2e-15
Identities = 31/47 (65%), Positives = 36/47 (75%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEF 49
K+ C ICGY+YD GDPDNG++PGT F DLP+DWVCP CG K EF
Sbjct: 3 KYVCDICGYVYDPAVGDPDNGVAPGTAFADLPEDWVCPECGVSKDEF 49
>pir||H81133 rubredoxin NMB0993 [imported] - Neisseria meningitidis (group B
strain MD58, group A strain Z2491)
>gi|7226233|gb|AAF41396.1| (AE002450) rubredoxin
[Neisseria meningitidis MC58]
>gi|7379892|emb|CAB84462.1| (AL162755) putative
rubredoxin [Neisseria meningitidis Z2491]
Length = 56
Score = 80.0 bits (194), Expect = 3e-15
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEF 49
+A++ C CG+IYDE+ GDP++GI+PGTKFED+PDDW CP CG K +F
Sbjct: 1 MAQYMCGPCGWIYDEEHGDPEHGIAPGTKFEDIPDDWKCPECGVGKEDF 49
>dbj|BAA76336.1| (AB024936) rubredoxin [Rhodococcus sp. CIR2]
Length = 86
Score = 78.8 bits (191), Expect = 7e-15
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERI 52
W C++C +YD GDP+ GISPGT F+D+PDDWVCP+CGA K EF ++
Sbjct: 19 WVCEVCEDVYDPRLGDPEGGISPGTAFQDIPDDWVCPVCGARKKEFRKL 67
>sp|P09947|RUBR_CHLLT RUBREDOXIN (RD) >gi|79592|pir||A27537 rubredoxin - Chlorobium
limicola f.sp. thiosulfatophilum
Length = 53
Score = 77.6 bits (188), Expect = 2e-14
Identities = 29/48 (60%), Positives = 37/48 (76%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +CGY+YD +G+PD+ I PGT FEDLP+DWVCP+CG K FE
Sbjct: 3 KYVCSVCGYVYDPADGEPDDPIDPGTGFEDLPEDWVCPVCGVDKDLFE 50
>emb|CAA67881.1| (X99543) rubredoxin [Desulfoarculus baarsii]
Length = 53
Score = 77.3 bits (187), Expect = 2e-14
Identities = 30/48 (62%), Positives = 37/48 (76%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
K+ C +C Y YD +GDPDNG++PGT FEDLP DW CP+CGA K +FE
Sbjct: 3 KYVCGVCVYEYDPAKGDPDNGVAPGTAFEDLPADWSCPVCGASKDQFE 50
>pir||A82977 rubredoxin PA5351 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9951671|gb|AAG08736.1|AE004947_6 (AE004947)
rubredoxin [Pseudomonas aeruginosa]
Length = 55
Score = 76.1 bits (184), Expect = 4e-14
Identities = 29/51 (56%), Positives = 39/51 (75%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
KW+C +CG IYDE +G P+ GI GT++ED+P+DW+CP CG K +FE IE
Sbjct: 3 KWQCVVCGLIYDEAKGWPEEGIEAGTRWEDVPEDWLCPDCGVGKLDFEMIE 53
>pir||H82976 rubredoxin PA5350 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9951670|gb|AAG08735.1|AE004947_5 (AE004947)
rubredoxin [Pseudomonas aeruginosa]
Length = 55
Score = 75.7 bits (183), Expect = 6e-14
Identities = 30/51 (58%), Positives = 38/51 (73%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
KW+C +CG+IYDE G P+ GI GT++ED+P DWVCP CG K +FE IE
Sbjct: 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKIDFEMIE 53
>sp|P00271|RUBR_MEGEL RUBREDOXIN (RD) >gi|65802|pir||RUME rubredoxin - Megasphaera
elsdenii
Length = 52
Score = 74.1 bits (179), Expect = 2e-13
Identities = 31/51 (60%), Positives = 37/51 (71%), Gaps = 1/51 (1%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
K+ C ICGYIYDE EGD D ++ GTKF DLP DWVCP CGA K F +++
Sbjct: 3 KYECSICGYIYDEAEGD-DGNVAAGTKFADLPADWVCPTCGADKDAFVKMD 52
>sp|P00272|RUB2_PSEOL RUBREDOXIN 2 >gi|418615|pir||RUPSEO rubredoxin II - Pseudomonas
oleovorans plasmid OCT >gi|5824145|emb|CAB54052.1|
(AJ245436) rubredoxin 2 [Pseudomonas putida]
Length = 173
Score = 73.0 bits (176), Expect = 4e-13
Identities = 28/47 (59%), Positives = 34/47 (71%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEF 49
KW C CG+IYDE GD G +PGT+FED+PDDW CP CGA K ++
Sbjct: 121 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDY 167
>pir||B82814 rubredoxin XF0379 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9105211|gb|AAF83189.1|AE003889_6 (AE003889)
rubredoxin [Xylella fastidiosa]
Length = 57
Score = 72.6 bits (175), Expect = 5e-13
Identities = 25/49 (51%), Positives = 39/49 (79%)
Query: 4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERI 52
WRC +CG++Y E+EG P+ GI+ GT++ED+ ++WVCP CG K++FE +
Sbjct: 6 WRCTVCGFLYREEEGFPEEGIAAGTRWEDVSEEWVCPDCGIGKADFEMV 54
>pir||D64392 rubredoxin - Methanococcus jannaschii >gi|1591453|gb|AAB98734.1|
(U67520) rubredoxin 2 (rd2) [Methanococcus jannaschii]
Length = 55
Score = 70.6 bits (170), Expect = 2e-12
Identities = 28/53 (52%), Positives = 41/53 (76%), Gaps = 1/53 (1%)
Query: 1 VAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+A+++C +CG++YDED+G+P I PGTKFEDLPD + CP CG K+ F +I+
Sbjct: 4 MARYQC-MCGWVYDEDKGEPSQNIPPGTKFEDLPDTFRCPQCGLGKNAFRKID 55
>pir||D70593 probable rubB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2072717|emb|CAB08351.1| (Z95121) rubB
[Mycobacterium tuberculosis]
Length = 60
Score = 70.6 bits (170), Expect = 2e-12
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+RC CG+ YDE G P++GI+ GT+++D+PDDW CP CGA KS+FE +E
Sbjct: 7 FRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVE 56
>emb|CAB51049.1| (AJ233397) rubredoxin 2 [Pseudomonas putida]
Length = 175
Score = 70.6 bits (170), Expect = 2e-12
Identities = 27/47 (57%), Positives = 34/47 (71%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEF 49
KW C CG+IYDE GD G +PGT+FED+P+DW CP CGA K ++
Sbjct: 121 KWICITCGHIYDEALGDEVEGFAPGTRFEDIPNDWCCPDCGATKEDY 167
>pir||G69073 rubredoxin - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621197|gb|AAB84661.1| (AE000804) rubredoxin
[Methanobacterium thermoautotrophicum]
Length = 63
Score = 70.2 bits (169), Expect = 3e-12
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53
+++C++CGYIYD ++G+P PGT FEDLP+ W CP CGA K F+ ++
Sbjct: 13 RYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKPLD 63
>gb|AAB39992.1| (U82323) rubredoxin-like protein [Desulfovibrio vulgaris]
Length = 75
Score = 67.9 bits (163), Expect = 1e-11
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 4 WRCKI--CGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEF 49
WRC+ CGY+YD D GD + PGT+FEDLPD+W CP+C A K F
Sbjct: 8 WRCQTVNCGYVYDPDRGDKRGKVPPGTRFEDLPDEWRCPICKATKKCF 55
>pir||G64391 rubredoxin - Methanococcus jannaschii >gi|1591450|gb|AAB98730.1|
(U67520) rubredoxin 1 (rd1) [Methanococcus jannaschii]
Length = 80
Score = 65.6 bits (157), Expect = 7e-11
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 3 KWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP--KSEFERIE 53
K++CK+CG++YD +GDP I P T FE+LPD W+CP+C K FE ++
Sbjct: 21 KYKCKVCGWVYDPLKGDPSQNIPPKTPFEELPDTWICPVCRGKVGKESFEPLD 73
>gb|AAD25628.1|AC005287_30 (AC005287) Hypothetical protein [Arabidopsis thaliana]
Length = 195
Score = 65.6 bits (157), Expect = 7e-11
Identities = 26/47 (55%), Positives = 32/47 (67%)
Query: 4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
+ C+ CGY YDE GDP I PG +F+ LP+DW CP CGA +S FE
Sbjct: 100 YECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFE 146
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.146 0.508
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27346392
Number of Sequences: 2977
Number of extensions: 930336
Number of successful extensions: 2103
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 52
length of query: 53
length of database: 189,106,746
effective HSP length: 32
effective length of query: 21
effective length of database: 169,955,162
effective search space: 3569058402
effective search space used: 3569058402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)