BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7281 (PAB7281) DE:Hypothetical protein
         (99 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75090 hypothetical protein PAB7281 - Pyrococcus abyssi (st...   194  2e-49
pir||D71052 hypothetical protein PH1115 - Pyrococcus horikoshii ...   167  4e-41
sp|Q60371|Y067_METJA HYPOTHETICAL PROTEIN MJ0067 >gi|2128108|pir...    80  5e-15
pir||B72634 hypothetical protein APE1529 - Aeropyrum pernix (str...    68  3e-11

>pir||H75090 hypothetical protein PAB7281 - Pyrococcus abyssi (strain Orsay)
          >gi|5458541|emb|CAB50029.1| (AJ248286) hypothetical
          protein [Pyrococcus abyssi]
          Length = 99
          
 Score =  194 bits (489), Expect = 2e-49
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MDLNMTGITGDIGIGAIVGFIVGYALKKFLKLVLALIGAYILSLFWLQQKGVITINTDAL 60
          MDLNMTGITGDIGIGAIVGFIVGYALKKFLKLVLALIGAYILSLFWLQQKGVITINTDAL
Sbjct: 1  MDLNMTGITGDIGIGAIVGFIVGYALKKFLKLVLALIGAYILSLFWLQQKGVITINTDAL 60

Query: 61 FNLAKSATEQTMSLADKVVGILPGSTAFIAAFYLGFKKG 99
          FNLAKSATEQTMSLADKVVGILPGSTAFIAAFYLGFKKG
Sbjct: 61 FNLAKSATEQTMSLADKVVGILPGSTAFIAAFYLGFKKG 99


>pir||D71052 hypothetical protein PH1115 - Pyrococcus horikoshii
           >gi|3257531|dbj|BAA30214.1| (AP000005) 116aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 116
           
 Score =  167 bits (418), Expect = 4e-41
 Identities = 79/99 (79%), Positives = 90/99 (90%)

Query: 1   MDLNMTGITGDIGIGAIVGFIVGYALKKFLKLVLALIGAYILSLFWLQQKGVITINTDAL 60
           MD N+ GI+GD+GIGA++GFI GYALKKFLK+V ALIG YILSLFWLQQKGVI INT+AL
Sbjct: 18  MDFNIGGISGDVGIGAVIGFITGYALKKFLKIVAALIGVYILSLFWLQQKGVIKINTEAL 77

Query: 61  FNLAKSATEQTMSLADKVVGILPGSTAFIAAFYLGFKKG 99
           FNLAKSAT+QT+ LADKV+GILPGS AFIA FYLGF+KG
Sbjct: 78  FNLAKSATQQTIGLADKVIGILPGSAAFIAGFYLGFRKG 116


>sp|Q60371|Y067_METJA HYPOTHETICAL PROTEIN MJ0067 >gi|2128108|pir||C64308 hypothetical
           protein MJ0067 - Methanococcus jannaschii
           >gi|1498829|gb|AAB98052.1| (U67464) M. jannaschii
           predicted coding region MJ0067 [Methanococcus
           jannaschii]
           Length = 103
           
 Score = 80.4 bits (195), Expect = 5e-15
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 3   LNMTGITGDIGIGAIVGFIVGYALKKFLKLVLALIGAYILSLFWLQQKGVITINTDALFN 62
           L+ +    DIG G I+GF++G+A KK +K+V  LIG YILSL +L + GVI+IN +A   
Sbjct: 4   LDFSQFLPDIGSGFIIGFVIGWAAKKAIKVVAFLIGIYILSLLYLAKIGVISINKEAFSA 63

Query: 63  LAKSATEQTMSLADKVVGILPG---STAFIAAFYLGFKKG 99
           L  +     +   DK++G++      T+F+  F LGFKKG
Sbjct: 64  LLGNLENSLLVFGDKIIGLIHSFSFGTSFLIGFGLGFKKG 103


>pir||B72634 hypothetical protein APE1529 - Aeropyrum pernix (strain K1)
           >gi|5105214|dbj|BAA80528.1| (AP000061) 114aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 114
           
 Score = 67.9 bits (163), Expect = 3e-11
 Identities = 37/98 (37%), Positives = 54/98 (54%), Gaps = 4/98 (4%)

Query: 6   TGITGDIGIGAIVGFIVGYALKKFLKLVLALIGAYILSLFWLQQKGVITINTDALFNLAK 65
           TG+   +G G I+GF  GYALKK +K++L ++G + L L  L   GVI++N D L  L +
Sbjct: 17  TGVLLQLGGGGILGFAAGYALKKAIKILLLVVGVFTLGLMGLAYYGVISVNWDKLALLVE 76

Query: 66  SATE----QTMSLADKVVGILPGSTAFIAAFYLGFKKG 99
            A         SL   ++   P + +F+  F LGFK G
Sbjct: 77  RAISGGGAAAASLKSYIIAATPFAASFLVGFSLGFKYG 114


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.144    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31514702
Number of Sequences: 2977
Number of extensions: 1008767
Number of successful extensions: 3942
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3938
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 189,106,746
effective HSP length: 50
effective length of query: 49
effective length of database: 159,182,396
effective search space: 7799937404
effective search space used: 7799937404
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 159 (66.3 bits)