BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7289 (rpL34E) DE:LSU ribosomal protein L34E
(91 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75094 lsu ribosomal protein l34e PAB7289 - Pyrococcus abys... 200 4e-51
sp|O74006|RL34_PYRHO 50S RIBOSOMAL PROTEIN L34E >gi|7441160|pir|... 190 3e-48
sp|P54053|RL34_METJA 50S RIBOSOMAL PROTEIN L34E >gi|2129256|pir|... 123 6e-28
sp|O26137|RL34_METTH 50S RIBOSOMAL PROTEIN L34E >gi|7441161|pir|... 104 2e-22
gb|AAK40993.1| LSU ribosomal protein L34E (rpl34E) [Sulfolobus s... 83 1e-15
sp|O05981|RL34_SULAC 50S RIBOSOMAL PROTEIN L34E >gi|2076707|emb|... 76 1e-13
>pir||G75094 lsu ribosomal protein l34e PAB7289 - Pyrococcus abyssi (strain
Orsay) >gi|5458572|emb|CAB50060.1| (AJ248286) LSU
ribosomal protein L34E [Pyrococcus abyssi]
Length = 91
Score = 200 bits (503), Expect = 4e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 60
MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT
Sbjct: 1 MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 60
Query: 61 KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG 91
KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG
Sbjct: 61 KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG 91
>sp|O74006|RL34_PYRHO 50S RIBOSOMAL PROTEIN L34E >gi|7441160|pir||E71071 probable
ribosomal protein L34 - Pyrococcus horikoshii
>gi|3257684|dbj|BAA30367.1| (AP000005) 94aa long
hypothetical 50S ribosomal protein L34 [Pyrococcus
horikoshii]
Length = 94
Score = 190 bits (478), Expect = 3e-48
Identities = 84/91 (92%), Positives = 90/91 (98%)
Query: 1 MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 60
MKPMYRSRSWRRKYVRTPGGRVV+HFER+KPKIAHCAICGRPLNGIPRGRPVEMRKLPKT
Sbjct: 4 MKPMYRSRSWRRKYVRTPGGRVVVHFERKKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 63
Query: 61 KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG 91
KKRPERP P+LCP+CMRRVMKEQ+R+QIMKG
Sbjct: 64 KKRPERPMPYLCPRCMRRVMKEQIRSQIMKG 94
>sp|P54053|RL34_METJA 50S RIBOSOMAL PROTEIN L34E >gi|2129256|pir||G64381 ribosomal
protein L34 - Methanococcus jannaschii
>gi|1591368|gb|AAB98650.1| (U67513) LSU ribosomal
protein L34E [Methanococcus jannaschii]
Length = 89
Score = 123 bits (305), Expect = 6e-28
Identities = 54/84 (64%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
Query: 3 PMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKK 62
P YRSRS+RR Y RTPGGR+VIH++RRKP CAICG L+G+PRGRPVE+RKLPK+++
Sbjct: 4 PRYRSRSYRRIYRRTPGGRIVIHYKRRKPGKPKCAICGAELHGVPRGRPVEIRKLPKSQR 63
Query: 63 RPERPY-PHLCPKCMRRVMKEQVR 85
RPERPY +LCP+C++R+M ++ R
Sbjct: 64 RPERPYGGYLCPRCLKRLMIQKAR 87
>sp|O26137|RL34_METTH 50S RIBOSOMAL PROTEIN L34E >gi|7441161|pir||G69136 ribosomal
protein L34 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621066|gb|AAB84538.1| (AE000796)
ribosomal protein L34 (E.coli L36) [Methanobacterium
thermoautotrophicum]
Length = 88
Score = 104 bits (258), Expect = 2e-22
Identities = 46/83 (55%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Query: 5 YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRP 64
YRSRS++R + +TPGGR V H+ R+KP CA CG+PL+G+PRGRP E+RKL K+KKRP
Sbjct: 6 YRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKKRP 65
Query: 65 ERPY-PHLCPKCMRRVMKEQVRA 86
RPY + C C R+V K++ R+
Sbjct: 66 NRPYGGYYCSSCARKVFKKEARS 88
>gb|AAK40993.1| LSU ribosomal protein L34E (rpl34E) [Sulfolobus solfataricus]
Length = 88
Score = 82.7 bits (201), Expect = 1e-15
Identities = 40/88 (45%), Positives = 60/88 (67%), Gaps = 4/88 (4%)
Query: 2 KPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTK 61
+P RSRS RR YV+ P G+ VIH+ER++ IA CAIC +PL+G+ + + K K++
Sbjct: 3 RPALRSRSLRRVYVKLPSGKTVIHYERKRNDIAICAICKKPLHGV---KTNFLHKYSKSE 59
Query: 62 KRPERPY-PHLCPKCMRRVMKEQVRAQI 88
KRPERP+ +LC C+ +++K VR Q+
Sbjct: 60 KRPERPFGGYLCSSCLTQLIKATVRQQL 87
>sp|O05981|RL34_SULAC 50S RIBOSOMAL PROTEIN L34E >gi|2076707|emb|CAA73485.1| (Y13049)
ribosomal protein RL34 [Sulfolobus acidocaldarius]
Length = 87
Score = 76.1 bits (184), Expect = 1e-13
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 3 PMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKK 62
P RS S+R+ +V+ P G+ IH+ERRK IA C +C +PLNG+ K KT+K
Sbjct: 4 PQQRSGSFRKVFVKLPSGKSTIHYERRKDNIARCGMCKKPLNGVKNNYTY---KYSKTEK 60
Query: 63 RPERPY-PHLCPKCMRRVMKEQVR 85
RPER Y +LC KC+ ++K +R
Sbjct: 61 RPERVYGGYLCHKCLESLIKMTIR 84
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.142 0.471
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38690041
Number of Sequences: 2977
Number of extensions: 1615297
Number of successful extensions: 4594
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4585
Number of HSP's gapped (non-prelim): 6
length of query: 91
length of database: 189,106,746
effective HSP length: 44
effective length of query: 47
effective length of database: 162,773,318
effective search space: 7650345946
effective search space used: 7650345946
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 159 (66.3 bits)