BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7289 (rpL34E) DE:LSU ribosomal protein L34E
         (91 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75094 lsu ribosomal protein l34e PAB7289 - Pyrococcus abys...   200  4e-51
sp|O74006|RL34_PYRHO 50S RIBOSOMAL PROTEIN L34E >gi|7441160|pir|...   190  3e-48
sp|P54053|RL34_METJA 50S RIBOSOMAL PROTEIN L34E >gi|2129256|pir|...   123  6e-28
sp|O26137|RL34_METTH 50S RIBOSOMAL PROTEIN L34E >gi|7441161|pir|...   104  2e-22
gb|AAK40993.1| LSU ribosomal protein L34E (rpl34E) [Sulfolobus s...    83  1e-15
sp|O05981|RL34_SULAC 50S RIBOSOMAL PROTEIN L34E >gi|2076707|emb|...    76  1e-13

>pir||G75094 lsu ribosomal protein l34e PAB7289 - Pyrococcus abyssi  (strain
          Orsay) >gi|5458572|emb|CAB50060.1| (AJ248286) LSU
          ribosomal protein L34E [Pyrococcus abyssi]
          Length = 91
          
 Score =  200 bits (503), Expect = 4e-51
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 60
          MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT
Sbjct: 1  MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 60

Query: 61 KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG 91
          KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG
Sbjct: 61 KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG 91


>sp|O74006|RL34_PYRHO 50S RIBOSOMAL PROTEIN L34E >gi|7441160|pir||E71071 probable
          ribosomal protein L34 - Pyrococcus horikoshii
          >gi|3257684|dbj|BAA30367.1| (AP000005) 94aa long
          hypothetical 50S ribosomal protein L34 [Pyrococcus
          horikoshii]
          Length = 94
          
 Score =  190 bits (478), Expect = 3e-48
 Identities = 84/91 (92%), Positives = 90/91 (98%)

Query: 1  MKPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 60
          MKPMYRSRSWRRKYVRTPGGRVV+HFER+KPKIAHCAICGRPLNGIPRGRPVEMRKLPKT
Sbjct: 4  MKPMYRSRSWRRKYVRTPGGRVVVHFERKKPKIAHCAICGRPLNGIPRGRPVEMRKLPKT 63

Query: 61 KKRPERPYPHLCPKCMRRVMKEQVRAQIMKG 91
          KKRPERP P+LCP+CMRRVMKEQ+R+QIMKG
Sbjct: 64 KKRPERPMPYLCPRCMRRVMKEQIRSQIMKG 94


>sp|P54053|RL34_METJA 50S RIBOSOMAL PROTEIN L34E >gi|2129256|pir||G64381 ribosomal
          protein L34 - Methanococcus jannaschii
          >gi|1591368|gb|AAB98650.1| (U67513) LSU ribosomal
          protein L34E  [Methanococcus jannaschii]
          Length = 89
          
 Score =  123 bits (305), Expect = 6e-28
 Identities = 54/84 (64%), Positives = 71/84 (84%), Gaps = 1/84 (1%)

Query: 3  PMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKK 62
          P YRSRS+RR Y RTPGGR+VIH++RRKP    CAICG  L+G+PRGRPVE+RKLPK+++
Sbjct: 4  PRYRSRSYRRIYRRTPGGRIVIHYKRRKPGKPKCAICGAELHGVPRGRPVEIRKLPKSQR 63

Query: 63 RPERPY-PHLCPKCMRRVMKEQVR 85
          RPERPY  +LCP+C++R+M ++ R
Sbjct: 64 RPERPYGGYLCPRCLKRLMIQKAR 87


>sp|O26137|RL34_METTH 50S RIBOSOMAL PROTEIN L34E >gi|7441161|pir||G69136 ribosomal
          protein L34 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621066|gb|AAB84538.1| (AE000796)
          ribosomal protein L34 (E.coli L36) [Methanobacterium
          thermoautotrophicum]
          Length = 88
          
 Score =  104 bits (258), Expect = 2e-22
 Identities = 46/83 (55%), Positives = 62/83 (74%), Gaps = 1/83 (1%)

Query: 5  YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRP 64
          YRSRS++R + +TPGGR V H+ R+KP    CA CG+PL+G+PRGRP E+RKL K+KKRP
Sbjct: 6  YRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKKRP 65

Query: 65 ERPY-PHLCPKCMRRVMKEQVRA 86
           RPY  + C  C R+V K++ R+
Sbjct: 66 NRPYGGYYCSSCARKVFKKEARS 88


>gb|AAK40993.1| LSU ribosomal protein L34E (rpl34E) [Sulfolobus solfataricus]
          Length = 88
          
 Score = 82.7 bits (201), Expect = 1e-15
 Identities = 40/88 (45%), Positives = 60/88 (67%), Gaps = 4/88 (4%)

Query: 2  KPMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTK 61
          +P  RSRS RR YV+ P G+ VIH+ER++  IA CAIC +PL+G+   +   + K  K++
Sbjct: 3  RPALRSRSLRRVYVKLPSGKTVIHYERKRNDIAICAICKKPLHGV---KTNFLHKYSKSE 59

Query: 62 KRPERPY-PHLCPKCMRRVMKEQVRAQI 88
          KRPERP+  +LC  C+ +++K  VR Q+
Sbjct: 60 KRPERPFGGYLCSSCLTQLIKATVRQQL 87


>sp|O05981|RL34_SULAC 50S RIBOSOMAL PROTEIN L34E >gi|2076707|emb|CAA73485.1| (Y13049)
          ribosomal protein RL34 [Sulfolobus acidocaldarius]
          Length = 87
          
 Score = 76.1 bits (184), Expect = 1e-13
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 3  PMYRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKK 62
          P  RS S+R+ +V+ P G+  IH+ERRK  IA C +C +PLNG+         K  KT+K
Sbjct: 4  PQQRSGSFRKVFVKLPSGKSTIHYERRKDNIARCGMCKKPLNGVKNNYTY---KYSKTEK 60

Query: 63 RPERPY-PHLCPKCMRRVMKEQVR 85
          RPER Y  +LC KC+  ++K  +R
Sbjct: 61 RPERVYGGYLCHKCLESLIKMTIR 84


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.142    0.471 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38690041
Number of Sequences: 2977
Number of extensions: 1615297
Number of successful extensions: 4594
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4585
Number of HSP's gapped (non-prelim): 6
length of query: 91
length of database: 189,106,746
effective HSP length: 44
effective length of query: 47
effective length of database: 162,773,318
effective search space: 7650345946
effective search space used: 7650345946
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 159 (66.3 bits)