BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7290 (rpl14E) DE:LSU ribosomal protein L14E
         (82 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75095 lsu ribosomal protein l14e PAB7290 - Pyrococcus abys...   162  7e-40
gb|AAK40722.1| LSU ribosomal protein L14E (rpl14E) [Sulfolobus s...   104  1e-22
sp|P54054|R14E_METJA 50S RIBOSOMAL PROTEIN L14E >gi|2129249|pir|...   104  1e-22
sp|Q9YDD7|R14E_AERPE 50S RIBOSOMAL PROTEIN L14E >gi|7521362|pir|...    98  2e-20
sp|O26139|R14E_METTH 50S RIBOSOMAL PROTEIN L14E >gi|7482814|pir|...    71  2e-12

>pir||A75095 lsu ribosomal protein l14e PAB7290 - Pyrococcus abyssi  (strain
          Orsay) >gi|5458574|emb|CAB50062.1| (AJ248286) LSU
          ribosomal protein L14E [Pyrococcus abyssi]
          Length = 82
          
 Score =  162 bits (405), Expect = 7e-40
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAGLNKVKRRRMNIKHLEPLPEKI 60
          MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAGLNKVKRRRMNIKHLEPLPEKI
Sbjct: 1  MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAGLNKVKRRRMNIKHLEPLPEKI 60

Query: 61 DIPRGASDEEVKAALEKAGISL 82
          DIPRGASDEEVKAALEKAGISL
Sbjct: 61 DIPRGASDEEVKAALEKAGISL 82


>gb|AAK40722.1| LSU ribosomal protein L14E (rpl14E) [Sulfolobus solfataricus]
          Length = 96
          
 Score =  104 bits (258), Expect = 1e-22
 Identities = 54/82 (65%), Positives = 64/82 (77%), Gaps = 1/82 (1%)

Query: 1  MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTG-AGLNKVKRRRMNIKHLEPLPEK 59
          MPAI+VGRI V + GR AG KCVIVDIID NFVLVTG   +  VKRRR+NI HLEP  +K
Sbjct: 1  MPAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKK 60

Query: 60 IDIPRGASDEEVKAALEKAGIS 81
          IDI +GASDEEVK  LE++ ++
Sbjct: 61 IDIQKGASDEEVKKKLEESNLT 82


>sp|P54054|R14E_METJA 50S RIBOSOMAL PROTEIN L14E >gi|2129249|pir||A64382 ribosomal
          protein L14B - Methanococcus jannaschii
          >gi|1591370|gb|AAB98652.1| (U67513) LSU ribosomal
          protein L14E [Methanococcus jannaschii]
          Length = 80
          
 Score =  104 bits (258), Expect = 1e-22
 Identities = 52/80 (65%), Positives = 63/80 (78%), Gaps = 4/80 (5%)

Query: 1  MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAGLNKVKRRRMNIKHLEPLPEKI 60
          MPAI+VGR+ +  AGR AG+ CVIVDI+DKNFV+V G     VKRRR NIKHLEP  +K+
Sbjct: 1  MPAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGL----VKRRRCNIKHLEPTEKKV 56

Query: 61 DIPRGASDEEVKAALEKAGI 80
          DIP+GAS EEVK AL+ AG+
Sbjct: 57 DIPKGASTEEVKLALDAAGL 76


>sp|Q9YDD7|R14E_AERPE 50S RIBOSOMAL PROTEIN L14E >gi|7521362|pir||H72694 probable
          ribosomal protein L14 APE0976 - Aeropyrum pernix
          (strain K1) >gi|5104645|dbj|BAA79960.1| (AP000060)
          105aa long hypothetical 50S ribosomal protein L14
          [Aeropyrum pernix]
          Length = 105
          
 Score = 97.9 bits (240), Expect = 2e-20
 Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 1/79 (1%)

Query: 4  IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTG-AGLNKVKRRRMNIKHLEPLPEKIDI 62
          ++VGRI V   GR AG+KCVIVDIID+NFVLVTG   L  V+RRR+NI H+E L +K+DI
Sbjct: 10 VEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDI 69

Query: 63 PRGASDEEVKAALEKAGIS 81
           +GASDEEV  ALE+AG++
Sbjct: 70 QKGASDEEVLKALEEAGLA 88


>sp|O26139|R14E_METTH 50S RIBOSOMAL PROTEIN L14E >gi|7482814|pir||F69139 ribosomal
          protein L14 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621068|gb|AAB84540.1| (AE000796)
          ribosomal protein L14 [Methanobacterium
          thermoautotrophicum]
          Length = 75
          
 Score = 71.0 bits (171), Expect = 2e-12
 Identities = 40/76 (52%), Positives = 49/76 (63%), Gaps = 4/76 (5%)

Query: 1  MPAIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGAGLNKVKRRRMNIKHLEPLPEKI 60
          M AI+VGR+ V  AGR AG+  VI+DIIDKNFV V G     VK RR N+ HLEP   KI
Sbjct: 1  MAAIEVGRVCVKTAGREAGENGVILDIIDKNFVEVVGV---NVKNRRCNVSHLEPTENKI 57

Query: 61 DIPRGASDEEVKAALE 76
          ++ +    EE+K  LE
Sbjct: 58 EL-KSDDIEEIKKELE 72


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.141    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28072222
Number of Sequences: 2977
Number of extensions: 1021050
Number of successful extensions: 2837
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2832
Number of HSP's gapped (non-prelim): 5
length of query: 82
length of database: 189,106,746
effective HSP length: 51
effective length of query: 31
effective length of database: 158,583,909
effective search space: 4916101179
effective search space used: 4916101179
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 157 (65.6 bits)