BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7298 (PAB7298) DE:Hypothetical protein
         (67 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75098 hypothetical protein PAB7298 - Pyrococcus abyssi (st...   141  8e-34
gi|11497916 A. fulgidus predicted coding region AF0301 [Archaeog...   115  5e-26
gi|11497980 conserved hypothetical protein [Archaeoglobus fulgid...   101  1e-21

>pir||C75098 hypothetical protein PAB7298 - Pyrococcus abyssi (strain Orsay)
          >gi|5458600|emb|CAB50088.1| (AJ248286) hypothetical
          protein [Pyrococcus abyssi]
          Length = 67
          
 Score =  141 bits (352), Expect = 8e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MENAYELFQKLPDDLKREVIDYIEFLLEKKAKKKRGQLKLTWKGALKELRDKYSSVELQH 60
          MENAYELFQKLPDDLKREVIDYIEFLLEKKAKKKRGQLKLTWKGALKELRDKYSSVELQH
Sbjct: 1  MENAYELFQKLPDDLKREVIDYIEFLLEKKAKKKRGQLKLTWKGALKELRDKYSSVELQH 60

Query: 61 KALEWWE 67
          KALEWWE
Sbjct: 61 KALEWWE 67


>gi|11497916 A. fulgidus predicted coding region AF0301 [Archaeoglobus
          fulgidus] >gi|7483403|pir||E69287 hypothetical protein
          AF0301 - Archaeoglobus fulgidus
          >gi|2650342|gb|AAB90941.1| (AE001084) A. fulgidus
          predicted coding region AF0301 [Archaeoglobus fulgidus]
          Length = 67
          
 Score =  115 bits (286), Expect = 5e-26
 Identities = 50/66 (75%), Positives = 61/66 (91%)

Query: 1  MENAYELFQKLPDDLKREVIDYIEFLLEKKAKKKRGQLKLTWKGALKELRDKYSSVELQH 60
          M+ +YELFQKLPD+LKREV+DYIEFLLE++AK+++  L L+WKGALKELRDKY+SVELQH
Sbjct: 1  MDKSYELFQKLPDELKREVLDYIEFLLERRAKREKSHLSLSWKGALKELRDKYTSVELQH 60

Query: 61 KALEWW 66
          K LEWW
Sbjct: 61 KVLEWW 66


>gi|11497980 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|7483001|pir||H69295 conserved hypothetical protein
          AF0368 - Archaeoglobus fulgidus
          >gi|2650272|gb|AAB90872.1| (AE001079) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 58
          
 Score =  101 bits (249), Expect = 1e-21
 Identities = 48/57 (84%), Positives = 53/57 (92%)

Query: 1  MENAYELFQKLPDDLKREVIDYIEFLLEKKAKKKRGQLKLTWKGALKELRDKYSSVE 57
          ME AYELFQKLPDDLKREVIDY+EFLLE+K KKK  +LKL+WKGALKELRDKY+SVE
Sbjct: 1  MERAYELFQKLPDDLKREVIDYMEFLLERKVKKKGDKLKLSWKGALKELRDKYTSVE 57


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.135    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24826642
Number of Sequences: 2977
Number of extensions: 822943
Number of successful extensions: 3265
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3262
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 189,106,746
effective HSP length: 46
effective length of query: 21
effective length of database: 161,576,344
effective search space: 3393103224
effective search space used: 3393103224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)