BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7309 (PAB7309) DE:Hypothetical protein
         (83 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75103 hypothetical protein PAB7309 - Pyrococcus abyssi (st...   159  6e-39
pir||A71084 hypothetical protein PHS029 - Pyrococcus horikoshii ...   120  4e-27
pir||G69179 conserved hypothetical protein MTH600 - Methanobacte...    75  2e-13
pir||H64501 conserved hypothetical protein MJ1617 - Methanococcu...    66  8e-11

>pir||B75103 hypothetical protein PAB7309 - Pyrococcus abyssi (strain Orsay)
          >gi|5458639|emb|CAB50127.1| (AJ248286) hypothetical
          protein [Pyrococcus abyssi]
          Length = 83
          
 Score =  159 bits (398), Expect = 6e-39
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MRGETLIIAGIIMIILGFMLVFLGTLLAAFSQPQESNVEAGGVIMIGPIPIAFGTKRGVT 60
          MRGETLIIAGIIMIILGFMLVFLGTLLAAFSQPQESNVEAGGVIMIGPIPIAFGTKRGVT
Sbjct: 1  MRGETLIIAGIIMIILGFMLVFLGTLLAAFSQPQESNVEAGGVIMIGPIPIAFGTKRGVT 60

Query: 61 IAMILALVLMISWFLLALLSRRL 83
          IAMILALVLMISWFLLALLSRRL
Sbjct: 61 IAMILALVLMISWFLLALLSRRL 83


>pir||A71084 hypothetical protein PHS029 - Pyrococcus horikoshii
          >gi|3257348|dbj|BAA30031.1| (AP000004) 69aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 69
          
 Score =  120 bits (297), Expect = 4e-27
 Identities = 55/68 (80%), Positives = 66/68 (96%)

Query: 15 ILGFMLVFLGTLLAAFSQPQESNVEAGGVIMIGPIPIAFGTKRGVTIAMILALVLMISWF 74
          ++GFMLVFLGTL++AF QPQESNVEAGG+IMIGP+PIAFGT+RGVTIAM+LAL+LM++WF
Sbjct: 1  MIGFMLVFLGTLISAFGQPQESNVEAGGIIMIGPVPIAFGTRRGVTIAMVLALLLMLTWF 60

Query: 75 LLALLSRR 82
          L ALLSRR
Sbjct: 61 LFALLSRR 68


>pir||G69179 conserved hypothetical protein MTH600 - Methanobacterium
          thermoautotrophicum (strain Delta H)
          >gi|2621680|gb|AAB85106.1| (AE000842) conserved protein
          [Methanobacterium thermoautotrophicum]
          Length = 85
          
 Score = 74.9 bits (181), Expect = 2e-13
 Identities = 39/78 (50%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 1  MRGETLIIAGIIMIILGFMLVFLGTLLAAFSQPQESN-VEAGGVIMIGPIPIAFGTKRGV 59
          MRGE LI AG+I+I+ G +L F+G  + A SQ ++   V+A GV+MIGPIPI FG+ R +
Sbjct: 5  MRGEVLIPAGVILIVAGILLTFIGGAITAGSQSKDKGEVKAAGVVMIGPIPIIFGSDRNM 64

Query: 60 TI-AMILALVLMISWFLL 76
           I  ++LAL+LM+  +LL
Sbjct: 65 AITGVVLALILMVVAYLL 82


>pir||H64501 conserved hypothetical protein MJ1617 - Methanococcus jannaschii
          >gi|1500516|gb|AAB99646.1| (U67602) M. jannaschii
          predicted coding region MJ1617 [Methanococcus
          jannaschii]
          Length = 93
          
 Score = 66.0 bits (158), Expect = 8e-11
 Identities = 34/86 (39%), Positives = 51/86 (58%), Gaps = 8/86 (9%)

Query: 6  LIIAGIIMIILGFMLVFLGTLLAA----FSQPQ----ESNVEAGGVIMIGPIPIAFGTKR 57
          LI  GII++ +GF ++ LG +L +    + +P+    ES+VE  G++MIGPIPI FG   
Sbjct: 7  LIFLGIILMFIGFFMITLGMILPSSQENYEKPETEKTESSVEYSGIVMIGPIPIVFGNSP 66

Query: 58 GVTIAMILALVLMISWFLLALLSRRL 83
          G+ I  +L  +LMI W  L     R+
Sbjct: 67 GLMILSVLIAILMIIWMFLFAFGIRI 92


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.334    0.149    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24272537
Number of Sequences: 2977
Number of extensions: 780757
Number of successful extensions: 6041
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6036
Number of HSP's gapped (non-prelim): 4
length of query: 83
length of database: 189,106,746
effective HSP length: 48
effective length of query: 35
effective length of database: 160,379,370
effective search space: 5613277950
effective search space used: 5613277950
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.5 bits)
S2: 158 (66.0 bits)