BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7315 (hypC) DE:hydrogenase expression/formation protein
(hypC)
(75 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75031 hydrogenase expression/formation protein (hypc) PAB7... 152 6e-37
pir||D69087 hydrogenase expression/formation protein HypC - Meth... 89 6e-18
gi|11498965 hydrogenase expression/formation protein (hypC) [Arc... 82 7e-16
sp|Q57653|Y200_METJA PUTATIVE HYDROGENASE EXPRESSION/FORMATION P... 78 1e-14
pir||G71883 hydrogenase expression/formation protein - Helicobac... 75 1e-13
pir||C64632 hydrogenase expression/formation protein - Helicobac... 75 2e-13
sp|P31900|HYPC_ALCEU HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 73 4e-13
sp|P74095|HYPC_SYNY3 HYDROGENASE EXPRESSION/FORMATION PROTEIN HY... 68 1e-11
sp|Q43951|HYPC_AZOCH PROBABLE HYDROGENASE EXPRESSION/FORMATION P... 67 3e-11
sp|P31881|HYPC_AZOVI PROBABLE HYDROGENASE EXPRESSION/FORMATION P... 66 5e-11
>pir||F75031 hydrogenase expression/formation protein (hypc) PAB7315 -
Pyrococcus abyssi (strain Orsay)
>gi|5458660|emb|CAB50147.1| (AJ248287) hydrogenase
expression/formation protein (hypC) [Pyrococcus abyssi]
Length = 75
Score = 152 bits (380), Expect = 6e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MCLAIPGRVVEIRDNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAKE 60
MCLAIPGRVVEIRDNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAKE
Sbjct: 1 MCLAIPGRVVEIRDNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAKE 60
Query: 61 ILEAWDEVFSILGGE 75
ILEAWDEVFSILGGE
Sbjct: 61 ILEAWDEVFSILGGE 75
>pir||D69087 hydrogenase expression/formation protein HypC - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622778|gb|AAB86122.1| (AE000924) hydrogenase
expression/formation protein HypC [Methanobacterium
thermoautotrophicum]
Length = 82
Score = 89.3 bits (218), Expect = 6e-18
Identities = 40/77 (51%), Positives = 58/77 (74%), Gaps = 2/77 (2%)
Query: 1 MCLAIPGRVVEI--RDNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERA 58
MC+A P +++EI DN+ VDFGGV+++V+LDL+ DV+ G YV+VH+G+AIE + +E A
Sbjct: 1 MCIAAPAQIIEIDSEDNIATVDFGGVRQQVKLDLVDDVEEGKYVLVHSGYAIEVMSDEAA 60
Query: 59 KEILEAWDEVFSILGGE 75
+E LEAWDE+ L E
Sbjct: 61 RESLEAWDELLKALEEE 77
>gi|11498965 hydrogenase expression/formation protein (hypC) [Archaeoglobus
fulgidus] >gi|7447447|pir||H69420 hydrogenase
expression/formation protein (hypC) homolog -
Archaeoglobus fulgidus >gi|2649207|gb|AAB89878.1|
(AE001009) hydrogenase expression/formation protein
(hypC) [Archaeoglobus fulgidus]
Length = 77
Score = 82.3 bits (200), Expect = 7e-16
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 1 MCLAIPGRVVEIRDNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAKE 60
MC+AIPGR+ I + IVDF G+K+EVR+DLL + ++GDYV+VH G AI+K+DEE AK+
Sbjct: 1 MCIAIPGRIERIDYPIAIVDFKGLKKEVRIDLLENPQIGDYVLVHVGMAIQKVDEEEAKK 60
Query: 61 ILEAWDEVFSILGGE 75
E + V G +
Sbjct: 61 TWELLERVADETGNQ 75
>sp|Q57653|Y200_METJA PUTATIVE HYDROGENASE EXPRESSION/FORMATION PROTEIN MJ0200
>gi|2127978|pir||A64325 hydrogenase
expression/formation protein C homolog - Methanococcus
jannaschii >gi|1498975|gb|AAB98184.1| (U67476)
hydrogenase expression/formation protein (hypC)
[Methanococcus jannaschii]
Length = 82
Score = 78.4 bits (190), Expect = 1e-14
Identities = 40/77 (51%), Positives = 56/77 (71%), Gaps = 5/77 (6%)
Query: 1 MCLAIPGRVVEIRDNVG----IVDFGGVKREVRLDLLS-DVKVGDYVIVHTGFAIEKLDE 55
MCLAIP +VVEI + G I ++ GVK++ +L LL +VK+GDY+++HTG+A+E L E
Sbjct: 1 MCLAIPCKVVEIIEEDGEKYAIAEYKGVKQKAKLTLLDKEVKIGDYILIHTGYALEVLSE 60
Query: 56 ERAKEILEAWDEVFSIL 72
E AK LEAW+E+F L
Sbjct: 61 EDAKLSLEAWEELFKAL 77
>pir||G71883 hydrogenase expression/formation protein - Helicobacter pylori
(strain J99) >gi|4155405|gb|AAD06414.1| (AE001512)
Hydrogenase expression/formation protein [Helicobacter
pylori J99]
Length = 78
Score = 74.9 bits (181), Expect = 1e-13
Identities = 34/71 (47%), Positives = 52/71 (72%), Gaps = 1/71 (1%)
Query: 1 MCLAIPGRVVEIRDNVGIVDFGGVKREVRLDLLSD-VKVGDYVIVHTGFAIEKLDEERAK 59
MCLAIP +V+ I DNV +++ GV+RE LDL+ + VKVGDYV++H G+ + K+DE+ A
Sbjct: 1 MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL 60
Query: 60 EILEAWDEVFS 70
E +E + E+ +
Sbjct: 61 ESIELYQEMIA 71
>pir||C64632 hydrogenase expression/formation protein - Helicobacter pylori
(strain 26695) >gi|2314034|gb|AAD07945.1| (AE000599)
hydrogenase expression/formation protein (hypC)
[Helicobacter pylori 26695]
Length = 77
Score = 74.5 bits (180), Expect = 2e-13
Identities = 34/71 (47%), Positives = 53/71 (73%), Gaps = 1/71 (1%)
Query: 1 MCLAIPGRVVEIRDNVGIVDFGGVKREVRLDLLSD-VKVGDYVIVHTGFAIEKLDEERAK 59
MCLAIP +V+ I+DNV +++ GV+RE LDL+ + VKVGDYV++H G+ + K+DE+ A
Sbjct: 1 MCLAIPSKVIAIKDNVVLLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL 60
Query: 60 EILEAWDEVFS 70
E +E + E+ +
Sbjct: 61 ESIELYQEMIA 71
>sp|P31900|HYPC_ALCEU HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPC
>gi|321748|pir||S29977 hypC protein - Alcaligenes
eutrophus >gi|38774|emb|CAA49733.1| (X70183) HYPC
[Ralstonia eutropha]
Length = 90
Score = 73.4 bits (177), Expect = 4e-13
Identities = 35/69 (50%), Positives = 49/69 (70%), Gaps = 1/69 (1%)
Query: 1 MCLAIPGRVVEIR-DNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAK 59
MCLAIP R+VE++ D G+VD GV++ + L L++D VGDYVIVH G+AI K+D E A+
Sbjct: 1 MCLAIPARLVELQADQQGVVDLSGVRKTISLALMADAVVGDYVIVHVGYAIGKIDPEEAE 60
Query: 60 EILEAWDEV 68
L + E+
Sbjct: 61 RTLRLFAEL 69
>sp|P74095|HYPC_SYNY3 HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPC
>gi|7447444|pir||S75619 hydrogenase
expression/formation protein hypC - Synechocystis sp.
(strain PCC 6803) >gi|1653265|dbj|BAA18180.1| (D90912)
hydrogenase expression/formation protein HypC
[Synechocystis sp.]
Length = 76
Score = 68.3 bits (164), Expect = 1e-11
Identities = 35/68 (51%), Positives = 45/68 (65%), Gaps = 6/68 (8%)
Query: 1 MCLAIPGRVVEIRDN------VGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLD 54
MCLA+PG+VV + N G V FGG+ + + L + +VKVGDYVIVH GFAI +D
Sbjct: 1 MCLALPGQVVSLMPNSDPLLLTGKVSFGGIIKTISLAYVPEVKVGDYVIVHVGFAISIVD 60
Query: 55 EERAKEIL 62
EE A+E L
Sbjct: 61 EEAAQETL 68
>sp|Q43951|HYPC_AZOCH PROBABLE HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPC
>gi|484411|pir||JN0649 hydrogenase expression/formation
protein HupC - Azotobacter chroococcum
>gi|289237|gb|AAA22135.1| (L00674) hydrogenase
accessory protein HupC [Azotobacter chroococcum]
Length = 84
Score = 67.1 bits (161), Expect = 3e-11
Identities = 34/76 (44%), Positives = 48/76 (62%), Gaps = 1/76 (1%)
Query: 1 MCLAIPGRVVEIRDNVGIVD-FGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAK 59
MCLAIP R+ E+ D V GG+++ + + LL D+KVGDYVI+H GFA++KLDE A+
Sbjct: 1 MCLAIPVRIEELLDEQSAVACIGGLRKTINVALLDDLKVGDYVILHVGFALQKLDEAEAR 60
Query: 60 EILEAWDEVFSILGGE 75
L E+ + E
Sbjct: 61 RTLALLAELGQLAEAE 76
>sp|P31881|HYPC_AZOVI PROBABLE HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPC
>gi|95052|pir||S23442 hypothetical protein 7 -
Azotobacter vinelandii >gi|39244|emb|CAA45186.1|
(X63650) ORF7 [Azotobacter vinelandii]
>gi|398010|gb|AAA19511.1| (L23970) hypC [Azotobacter
vinelandii]
Length = 84
Score = 66.3 bits (159), Expect = 5e-11
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MCLAIPGRVVEIRDNVGIVD-FGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAK 59
MCLAIP R+ E+ D V GG+++ + + LL D+KVGDYVI+H GFA++KLDE A+
Sbjct: 1 MCLAIPVRIEELLDEQSAVACIGGLRKTINVALLDDLKVGDYVILHVGFALQKLDEAEAQ 60
Query: 60 EIL 62
L
Sbjct: 61 RTL 63
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.146 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28181904
Number of Sequences: 2977
Number of extensions: 948489
Number of successful extensions: 2412
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2401
Number of HSP's gapped (non-prelim): 10
length of query: 75
length of database: 189,106,746
effective HSP length: 48
effective length of query: 27
effective length of database: 160,379,370
effective search space: 4330242990
effective search space used: 4330242990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 157 (65.6 bits)