BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7338 (PAB7338) DE:Hypothetical protein
         (99 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75042 hypothetical protein PAB7338 - Pyrococcus abyssi (st...   203  3e-52
gi|11499137 conserved hypothetical protein [Archaeoglobus fulgid...   114  3e-25
dbj|BAB04294.1| (AP001509) unknown conserved protein in others [...    94  5e-19
pir||E70569 hypothetical protein Rv3488 - Mycobacterium tubercul...    83  1e-15

>pir||D75042 hypothetical protein PAB7338 - Pyrococcus abyssi (strain Orsay)
          >gi|5458746|emb|CAB50233.1| (AJ248287) hypothetical
          protein [Pyrococcus abyssi]
          Length = 99
          
 Score =  203 bits (512), Expect = 3e-52
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MIRRVILGFMGLHILYHASKEPITGAYMMKELRKHGYDVSPGTMYPLLRKMESLGLLRSR 60
          MIRRVILGFMGLHILYHASKEPITGAYMMKELRKHGYDVSPGTMYPLLRKMESLGLLRSR
Sbjct: 1  MIRRVILGFMGLHILYHASKEPITGAYMMKELRKHGYDVSPGTMYPLLRKMESLGLLRSR 60

Query: 61 WDVRNGRRVRLYEITGKGLEVLEEGKKKVKELCSEILEG 99
          WDVRNGRRVRLYEITGKGLEVLEEGKKKVKELCSEILEG
Sbjct: 61 WDVRNGRRVRLYEITGKGLEVLEEGKKKVKELCSEILEG 99


>gi|11499137 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|7483137|pir||E69442 conserved hypothetical protein
          AF1542 - Archaeoglobus fulgidus
          >gi|2649019|gb|AAB89704.1| (AE000996) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 101
          
 Score =  114 bits (282), Expect = 3e-25
 Identities = 54/96 (56%), Positives = 76/96 (78%)

Query: 3  RRVILGFMGLHILYHASKEPITGAYMMKELRKHGYDVSPGTMYPLLRKMESLGLLRSRWD 62
          R++ILGF  +HILYHASKE I G++M++EL +HGY +SPGT+YP+L +ME  GLLRSR  
Sbjct: 4  RKLILGFARVHILYHASKEEIYGSWMIEELGRHGYSISPGTLYPILHEMEREGLLRSRKV 63

Query: 63 VRNGRRVRLYEITGKGLEVLEEGKKKVKELCSEILE 98
          V +GR  ++Y IT KG ++L++ ++KVKEL  EI+E
Sbjct: 64 VVDGRVRKMYRITEKGWKLLDDAREKVKELFEEIME 99


>dbj|BAB04294.1| (AP001509) unknown conserved protein in others [Bacillus
           halodurans]
           Length = 102
           
 Score = 93.6 bits (229), Expect = 5e-19
 Identities = 44/98 (44%), Positives = 66/98 (66%)

Query: 1   MIRRVILGFMGLHILYHASKEPITGAYMMKELRKHGYDVSPGTMYPLLRKMESLGLLRSR 60
           ++R++ LGF+ +HIL+HA + PI G +M++EL++HGYD+S GT+YP+L  ME+ GLL  +
Sbjct: 5   ILRKLFLGFIQIHILHHAKEHPIFGLWMLEELKEHGYDMSAGTLYPILHSMEADGLLVKQ 64

Query: 61  WDVRNGRRVRLYEITGKGLEVLEEGKKKVKELCSEILE 98
                G+  + Y  T KG  VL+E + K  EL  EI E
Sbjct: 65  EQKVEGKIRKYYTTTAKGESVLKEARSKAYELFKEIKE 102


>pir||E70569 hypothetical protein Rv3488 - Mycobacterium tuberculosis  (strain
          H37RV) >gi|2104411|emb|CAB08711.1| (Z95390)
          hypothetical protein Rv3488 [Mycobacterium
          tuberculosis]
          Length = 107
          
 Score = 82.7 bits (201), Expect = 1e-15
 Identities = 40/88 (45%), Positives = 58/88 (65%)

Query: 12 LHILYHASKEPITGAYMMKELRKHGYDVSPGTMYPLLRKMESLGLLRSRWDVRNGRRVRL 71
          LHIL+HA+   + GA++ +EL +HGY VSPGT+YP L ++E+ GLL S   V +GR  R+
Sbjct: 11 LHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRARRV 70

Query: 72 YEITGKGLEVLEEGKKKVKELCSEILEG 99
          Y  T  G   L E ++ ++EL  E+L G
Sbjct: 71 YRATPAGRAALTEDRRALEELAREVLGG 98


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38080533
Number of Sequences: 2977
Number of extensions: 1443301
Number of successful extensions: 3471
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 189,106,746
effective HSP length: 49
effective length of query: 50
effective length of database: 159,780,883
effective search space: 7989044150
effective search space used: 7989044150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)