BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7348 (PAB7348) DE:Hypothetical protein
         (77 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75048 hypothetical protein PAB7348 - Pyrococcus abyssi (st...   145  7e-35
pir||T45078 hypothetical protein [imported] - Pyrococcus furiosu...    70  4e-12

>pir||A75048 hypothetical protein PAB7348 - Pyrococcus abyssi (strain Orsay)
          >gi|5458791|emb|CAB50278.1| (AJ248287) hypothetical
          protein [Pyrococcus abyssi]
          Length = 77
          
 Score =  145 bits (362), Expect = 7e-35
 Identities = 76/77 (98%), Positives = 77/77 (99%)

Query: 1  IIIPLVLGIVVGYAIRGKVKFNFELLMSVTLVTLILLMGMKAGNVKVDALKILSYSITLA 60
          +IIPLVLGIVVGYAIRGKVKFNFELLMSVTLVTLILLMGMKAGNVKVDALKILSYSITLA
Sbjct: 1  MIIPLVLGIVVGYAIRGKVKFNFELLMSVTLVTLILLMGMKAGNVKVDALKILSYSITLA 60

Query: 61 LTSVVGSVTLAKIMWRE 77
          LTSVVGSVTLAKIMWRE
Sbjct: 61 LTSVVGSVTLAKIMWRE 77


>pir||T45078 hypothetical protein [imported] - Pyrococcus furiosus  (fragment)
          >gi|1197353|emb|CAA59495.1| (X85250) putative
          transmembrane protein [Pyrococcus furiosus]
          Length = 65
          
 Score = 69.9 bits (168), Expect = 4e-12
 Identities = 33/63 (52%), Positives = 50/63 (78%), Gaps = 1/63 (1%)

Query: 1  IIIPLVLGIVVGYAIRGK-VKFNFELLMSVTLVTLILLMGMKAGNVKVDALKILSYSITL 59
          I+IPL+LGI++GY +R +  K + ELLMSV+++ LI LMG++ GNVK+DA K+L YSI +
Sbjct: 3  ILIPLLLGIIIGYILRERRKKIDTELLMSVSVLVLIFLMGVRTGNVKIDATKVLLYSIAI 62

Query: 60 ALT 62
           ++
Sbjct: 63 MIS 65


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.143    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22001439
Number of Sequences: 2977
Number of extensions: 584597
Number of successful extensions: 1989
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1987
Number of HSP's gapped (non-prelim): 2
length of query: 77
length of database: 189,106,746
effective HSP length: 51
effective length of query: 26
effective length of database: 158,583,909
effective search space: 4123181634
effective search space used: 4123181634
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 156 (65.2 bits)