BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7359 (PAB7359) DE:Hypothetical protein
         (75 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75051 hypothetical protein PAB7359 - Pyrococcus abyssi (st...   146  2e-35
pir||E71108 probable regulatory protein AsnC - Pyrococcus horiko...   145  6e-35
gb|AAK40598.1| Regulatory protein, AsnC family, putative [Sulfol...    80  4e-15
pir||C75165 transcription regulatory protein, asnc family PAB711...    75  1e-13
pir||G71176 probable transcription regulator - Pyrococcus horiko...    68  9e-12

>pir||H75051 hypothetical protein PAB7359 - Pyrococcus abyssi (strain Orsay)
          >gi|5458822|emb|CAB50309.1| (AJ248287) hypothetical
          protein [Pyrococcus abyssi]
          Length = 75
          
 Score =  146 bits (365), Expect = 2e-35
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERI 60
          MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERI
Sbjct: 1  MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERI 60

Query: 61 RKMPEIQMTSTMIAI 75
          RKMPEIQMTSTMIAI
Sbjct: 61 RKMPEIQMTSTMIAI 75


>pir||E71108 probable regulatory protein AsnC - Pyrococcus horikoshii
          >gi|3257044|dbj|BAA29727.1| (AP000003) 75aa long
          hypothetical regulatory protein AsnC [Pyrococcus
          horikoshii]
          Length = 75
          
 Score =  145 bits (362), Expect = 6e-35
 Identities = 74/75 (98%), Positives = 75/75 (99%)

Query: 1  MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERI 60
          MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITE+I
Sbjct: 1  MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKI 60

Query: 61 RKMPEIQMTSTMIAI 75
          RKMPEIQMTSTMIAI
Sbjct: 61 RKMPEIQMTSTMIAI 75


>gb|AAK40598.1| Regulatory protein, AsnC family, putative [Sulfolobus
          solfataricus]
          Length = 83
          
 Score = 79.6 bits (193), Expect = 4e-15
 Identities = 39/73 (53%), Positives = 52/73 (70%)

Query: 1  MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERI 60
          M +A +L+ T AG E EV EKL  M EV EAYVVYG YD+++KVET+ +  L  FI+  I
Sbjct: 1  MASAIVLINTDAGGEEEVFEKLKNMNEVVEAYVVYGVYDIVIKVETENMDKLKNFISNSI 60

Query: 61 RKMPEIQMTSTMI 73
          RK+P+++ T TMI
Sbjct: 61 RKIPKVRSTLTMI 73


>pir||C75165 transcription regulatory protein, asnc family PAB7115 -
          Pyrococcus abyssi (strain Orsay)
          >gi|5457912|emb|CAB49402.1| (AJ248284) transcriptional
          regulatory protein, AsnC family [Pyrococcus abyssi]
          Length = 76
          
 Score = 74.5 bits (180), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 50/70 (71%)

Query: 5  FILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERIRKMP 64
          FIL+V   G E EV EKL   PEVKE Y VYG+YD+++++  D +K LD+F  E +RK+P
Sbjct: 4  FILLVIRPGLENEVYEKLKNRPEVKEIYKVYGDYDIVLRLSIDGIKALDKFHDEVLRKLP 63

Query: 65 EIQMTSTMIA 74
           I+++ T+IA
Sbjct: 64 GIELSETLIA 73


>pir||G71176 probable transcription regulator - Pyrococcus horikoshii
          >gi|3258123|dbj|BAA30806.1| (AP000007) 74aa long
          hypothetical transcriptional regulator [Pyrococcus
          horikoshii]
          Length = 74
          
 Score = 68.3 bits (164), Expect = 9e-12
 Identities = 32/70 (45%), Positives = 49/70 (69%)

Query: 5  FILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITERIRKMP 64
          FIL+V   G E EV EKL   PEVKE Y +YG+YD+I+++  + +K LD+F  + +RK+ 
Sbjct: 2  FILLVVRPGLENEVYEKLKDRPEVKEIYRLYGDYDIIIRLSVEGIKALDEFHDKVLRKLR 61

Query: 65 EIQMTSTMIA 74
           I+++ T+IA
Sbjct: 62 GIEISETLIA 71


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.135    0.351 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21024681
Number of Sequences: 2977
Number of extensions: 623798
Number of successful extensions: 2383
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2378
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 189,106,746
effective HSP length: 54
effective length of query: 21
effective length of database: 156,788,448
effective search space: 3292557408
effective search space used: 3292557408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)