BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7387 (rpl31E) DE:LSU ribosomal protein L31E (rpl31E)
         (94 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75066 lsu ribosomal protein l31e (rpl31e) PAB7387 - Pyroco...   190  4e-48
sp|P54009|RL31_METJA 50S RIBOSOMAL PROTEIN L31E >gi|2129255|pir|...    82  1e-15
sp|O27649|RL31_METTH 50S RIBOSOMAL PROTEIN L31E >gi|7441071|pir|...    78  2e-14
gi|11499648 LSU ribosomal protein L31E (rpl31E) [Archaeoglobus f...    74  3e-13
sp|Q9YD25|RL31_AERPE 50S RIBOSOMAL PROTEIN L31E >gi|7521368|pir|...    73  7e-13

>pir||D75066 lsu ribosomal protein l31e (rpl31e) PAB7387 - Pyrococcus abyssi
          (strain Orsay) >gi|5458938|emb|CAB50425.1| (AJ248287)
          LSU ribosomal protein L31E (rpl31E) [Pyrococcus abyssi]
          Length = 94
          
 Score =  190 bits (477), Expect = 4e-48
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MPIKPGEEVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWE 60
          MPIKPGEEVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWE
Sbjct: 1  MPIKPGEEVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWE 60

Query: 61 RGIEKPPSRLRVKVKVEEEDRDGKKVRIAYVDLA 94
          RGIEKPPSRLRVKVKVEEEDRDGKKVRIAYVDLA
Sbjct: 61 RGIEKPPSRLRVKVKVEEEDRDGKKVRIAYVDLA 94


>sp|P54009|RL31_METJA 50S RIBOSOMAL PROTEIN L31E >gi|2129255|pir||A64306 ribosomal
          protein L31 - Methanococcus jannaschii
          >gi|1590847|gb|AAB98030.1| (U67463) LSU ribosomal
          protein L31E [Methanococcus jannaschii]
          Length = 87
          
 Score = 82.3 bits (200), Expect = 1e-15
 Identities = 38/71 (53%), Positives = 53/71 (74%)

Query: 7  EEVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWERGIEKP 66
          EE I+T+P+R +     R KRAPRA+K +++F+ RH KA+ V I  ++NEKIWERGI+KP
Sbjct: 7  EERIYTIPLRDVINKSVRTKRAPRAIKKIKQFLKRHMKAEIVKIDNELNEKIWERGIQKP 66

Query: 67 PSRLRVKVKVE 77
          P+R+RVK   E
Sbjct: 67 PARVRVKAVKE 77


>sp|O27649|RL31_METTH 50S RIBOSOMAL PROTEIN L31E >gi|7441071|pir||D69082 ribosomal
          protein L31 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2622737|gb|AAB86085.1| (AE000920)
          ribosomal protein L31 [Methanobacterium
          thermoautotrophicum]
          Length = 81
          
 Score = 78.4 bits (190), Expect = 2e-14
 Identities = 39/73 (53%), Positives = 53/73 (72%), Gaps = 2/73 (2%)

Query: 8  EVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWERGIEKPP 67
          E I+ +P+RK K  VPR  RAP+AVK VREF+ +H KA  V +   +NEK+WERGI+K P
Sbjct: 2  ERIYVIPLRKAKN-VPRTIRAPKAVKIVREFLMKHMKADTVKLDESINEKLWERGIQKIP 60

Query: 68 SRLRVKVKVEEED 80
           R++VK  V++ED
Sbjct: 61 PRIKVKA-VKDED 72


>gi|11499648 LSU ribosomal protein L31E (rpl31E) [Archaeoglobus fulgidus]
          >gi|3914751|sp|O28213|RL31_ARCFU 50S RIBOSOMAL PROTEIN
          L31E >gi|7441070|pir||A69508 LSU ribosomal protein L31E
          (rpl31E) homolog - Archaeoglobus fulgidus
          >gi|2648485|gb|AAB89205.1| (AE000961) LSU ribosomal
          protein L31E (rpl31E) [Archaeoglobus fulgidus]
          Length = 88
          
 Score = 74.1 bits (179), Expect = 3e-13
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 8  EVIFTVPIRKIKKIVPRWKRAPRAVKFVREFVARHAKAQ--EVIISTKVNEKIWERGIEK 65
          E ++++ +R   K  PRW RA +A K+VR+F++RH K +   V I T VNEKIWERG EK
Sbjct: 7  ERVYSIRLRHKMKRYPRWLRAKKAAKYVRKFLSRHMKVEPENVKIDTAVNEKIWERGAEK 66

Query: 66 PPSRLRVK 73
          PP+++RV+
Sbjct: 67 PPTKIRVR 74


>sp|Q9YD25|RL31_AERPE 50S RIBOSOMAL PROTEIN L31E >gi|7521368|pir||H72708 probable
          ribosomal protein L31 APE1087 - Aeropyrum pernix
          (strain K1) >gi|5104757|dbj|BAA80072.1| (AP000060)
          105aa long hypothetical 50S ribosomal protein L31
          [Aeropyrum pernix]
          Length = 105
          
 Score = 73.0 bits (176), Expect = 7e-13
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 2/73 (2%)

Query: 24 RWKRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWERGIEKPPSRLRVKVKVEEEDRD- 82
          R +RA RAV+ VREFV RH KA EV+I  ++N  IW R  EKPP+R+++ V + EE+ + 
Sbjct: 22 RTRRAIRAVRMVREFVRRHTKADEVVIDNELNNYIWSRSREKPPARVKIIVSIREEEPEE 81

Query: 83 -GKKVRIAYVDLA 94
           G+++R A V LA
Sbjct: 82 GGERIRKAVVRLA 94


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33653246
Number of Sequences: 2977
Number of extensions: 1072573
Number of successful extensions: 3157
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3152
Number of HSP's gapped (non-prelim): 5
length of query: 94
length of database: 189,106,746
effective HSP length: 51
effective length of query: 43
effective length of database: 158,583,909
effective search space: 6819108087
effective search space used: 6819108087
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)