BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7388 (rplXA) DE:LSU ribosomal protein LXA (rplXA)
         (77 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75066 lsu ribosomal protein lxa (rplxa) PAB7388 - Pyrococc...   154  8e-38
sp|O73977|RLX_PYRHO 50S RIBOSOMAL PROTEIN LX >gi|7521378|pir||C7...   146  2e-35
sp|O27647|RLX_METTH 50S RIBOSOMAL PROTEIN LX >gi|7482815|pir||B6...    75  1e-13
sp|P54052|RLX_METJA 50S RIBOSOMAL PROTEIN LX >gi|2129259|pir||C6...    68  1e-11

>pir||F75066 lsu ribosomal protein lxa (rplxa) PAB7388 - Pyrococcus abyssi
          (strain Orsay) >gi|5458940|emb|CAB50427.1| (AJ248287)
          LSU ribosomal protein LXA (rplXA) [Pyrococcus abyssi]
          Length = 77
          
 Score =  154 bits (386), Expect = 8e-38
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MNVKVFRVSGYFEKNGRKFKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEI 60
          MNVKVFRVSGYFEKNGRKFKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEI
Sbjct: 1  MNVKVFRVSGYFEKNGRKFKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEI 60

Query: 61 RPEEAEDIVVRRLSLEL 77
          RPEEAEDIVVRRLSLEL
Sbjct: 61 RPEEAEDIVVRRLSLEL 77


>sp|O73977|RLX_PYRHO 50S RIBOSOMAL PROTEIN LX >gi|7521378|pir||C71166 probable
          ribosomal protein LX - Pyrococcus horikoshii
          >gi|3256933|dbj|BAA29616.1| (AP000002) 77aa long
          hypothetical 50S ribosomal protein LX [Pyrococcus
          horikoshii]
          Length = 77
          
 Score =  146 bits (366), Expect = 2e-35
 Identities = 72/77 (93%), Positives = 76/77 (98%)

Query: 1  MNVKVFRVSGYFEKNGRKFKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEI 60
          M VKVFRVSGYFEK+GRKFKFTKEYRALKEEHVKELVYSDIGS+HKVKRRKIFIKEI+EI
Sbjct: 1  MEVKVFRVSGYFEKDGRKFKFTKEYRALKEEHVKELVYSDIGSRHKVKRRKIFIKEIREI 60

Query: 61 RPEEAEDIVVRRLSLEL 77
          +PEEAEDIVVRRLSLEL
Sbjct: 61 KPEEAEDIVVRRLSLEL 77


>sp|O27647|RLX_METTH 50S RIBOSOMAL PROTEIN LX >gi|7482815|pir||B69082 ribosomal
          protein L18a - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2622735|gb|AAB86083.1| (AE000920)
          ribosomal protein L18a [Methanobacterium
          thermoautotrophicum]
          Length = 78
          
 Score = 74.5 bits (180), Expect = 1e-13
 Identities = 36/73 (49%), Positives = 49/73 (66%)

Query: 1  MNVKVFRVSGYFEKNGRKFKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEI 60
          M  K+FRV G F    +   FTKE  A++EE + E +YS+ GSKH+V R K+ I+EI+EI
Sbjct: 3  MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEI 62

Query: 61 RPEEAEDIVVRRL 73
           PEE +D VV+ L
Sbjct: 63 SPEEVQDPVVKAL 75


>sp|P54052|RLX_METJA 50S RIBOSOMAL PROTEIN LX >gi|2129259|pir||C64374 ribosomal
          protein LX - Methanococcus jannaschii
          >gi|1591304|gb|AAB98588.1| (U67508) LSU ribosomal
          protein LXA [Methanococcus jannaschii]
          Length = 76
          
 Score = 67.9 bits (163), Expect = 1e-11
 Identities = 32/71 (45%), Positives = 49/71 (68%), Gaps = 1/71 (1%)

Query: 4  KVFRVSGYFEKNGRK-FKFTKEYRALKEEHVKELVYSDIGSKHKVKRRKIFIKEIKEIRP 62
          K+FR++G   K G+    F KEY+ALK E   E++YS+ G ++KVKR +I I  I+EI+P
Sbjct: 3  KIFRITGIMSKKGKDPLYFRKEYKALKPEDALEILYSEFGGRYKVKRSRIKILNIEEIKP 62

Query: 63 EEAEDIVVRRL 73
          E+  D V+++L
Sbjct: 63 EDVTDPVLKKL 73


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.373 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26062706
Number of Sequences: 2977
Number of extensions: 901610
Number of successful extensions: 3139
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3134
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 189,106,746
effective HSP length: 56
effective length of query: 21
effective length of database: 155,591,474
effective search space: 3267420954
effective search space used: 3267420954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 156 (65.2 bits)